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| Mutant Information |
|---|
| Mutant Name | FN3674-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3674-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13320035 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 16915792 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 3211766 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 4724268 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g068400 |
| SBS | Chr3 | 8486079 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 23733419 | A-C | Hetero | INTRON | |
| SBS | Chr4 | 5243279 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 6296132 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 8124642 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 17822631 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 24722986 | G-A | Hetero | UTR_3_PRIME | |
| SBS | Chr4 | 24956922 | C-G | Hetero | INTRON | |
| SBS | Chr4 | 33711710 | C-T | Hetero | INTRON | |
| SBS | Chr5 | 6532498 | A-T | Homo | INTERGENIC | |
| SBS | Chr5 | 10314721 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 14395909 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 9518731 | C-G | Hetero | INTRON | |
| SBS | Chr6 | 20682311 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 5573363 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 11314192 | T-C | Homo | INTRON | |
| SBS | Chr8 | 14774142 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 3479203 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 7196640 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 17515715 | C-A | Hetero | INTRON | |
| SBS | Chr10 | 23399213 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25936630 | T-C | Homo | INTRON | |
| SBS | Chr12 | 4743356 | A-G | Hetero | INTERGENIC |
Deletions: 18
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr6 | 2492040 | 2492045 | 5 | |
| Deletion | Chr4 | 9789741 | 9789744 | 3 | |
| Deletion | Chr11 | 11506224 | 11506234 | 10 | |
| Deletion | Chr11 | 12548001 | 12698000 | 149999 | 2 |
| Deletion | Chr11 | 13688300 | 13688304 | 4 | |
| Deletion | Chr5 | 13928296 | 13928298 | 2 | |
| Deletion | Chr10 | 15662670 | 15662677 | 7 | |
| Deletion | Chr7 | 16610344 | 16610716 | 372 | OsKitaake07g136550 |
| Deletion | Chr8 | 18075001 | 18458000 | 382999 | 31 |
| Deletion | Chr6 | 18456375 | 18456376 | 1 | |
| Deletion | Chr6 | 23383561 | 23383573 | 12 | |
| Deletion | Chr3 | 23686001 | 23719000 | 32999 | 2 |
| Deletion | Chr6 | 24019100 | 24019110 | 10 | |
| Deletion | Chr11 | 25562734 | 25562736 | 2 | |
| Deletion | Chr3 | 26469001 | 26484000 | 14999 | 3 |
| Deletion | Chr1 | 29338987 | 29338993 | 6 | |
| Deletion | Chr2 | 31566769 | 31566778 | 9 | |
| Deletion | Chr2 | 32905677 | 32905678 | 1 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 3650173 | 3650176 | 2 | |
| Insertion | Chr7 | 21976534 | 21976538 | 3 | |
| Insertion | Chr10 | 14772848 | 14772851 | 2 | |
| Insertion | Chr9 | 2740684 | 2740686 | 1 |