Search Kitaake
| Mutant Information |
|---|
| Mutant Name | FN3675-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3675-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 41
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1982208 | C-A | Homo | INTRON | |
| SBS | Chr1 | 15750888 | A-G | Hetero | INTERGENIC | |
| SBS | Chr1 | 29132692 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 30163331 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 4942357 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g068700 |
| SBS | Chr2 | 7036024 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 9269396 | C-A | Homo | INTERGENIC | |
| SBS | Chr2 | 12521975 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 18454157 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 20248997 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 30655350 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 33713339 | A-G | Homo | INTERGENIC | |
| SBS | Chr2 | 34780872 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 4506090 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g064900 |
| SBS | Chr3 | 14927245 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 2903618 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 3790844 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 23227269 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 4324278 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 7866505 | A-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 6548467 | C-T | Homo | NON_SYNONYMOUS_CODING | OsKitaake06g085300 |
| SBS | Chr6 | 18874106 | C-T | Homo | INTERGENIC | |
| SBS | Chr7 | 23714991 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 24182691 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 4376369 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 16231932 | G-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 21611961 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 22013847 | A-G | Homo | INTRON | |
| SBS | Chr9 | 1645758 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 4235552 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 5008177 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 6777210 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 16033697 | C-A | Hetero | INTRON | |
| SBS | Chr10 | 3720852 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 7472286 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 2567972 | G-T | Hetero | INTRON | |
| SBS | Chr11 | 19511063 | A-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 22393485 | T-A | Hetero | INTRON | |
| SBS | Chr11 | 29690293 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 9081400 | C-T | Hetero | INTRON | |
| SBS | Chr12 | 21734778 | G-A | Homo | INTRON |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr10 | 32074 | 32076 | 2 | |
| Deletion | Chr8 | 1350629 | 1350631 | 2 | |
| Deletion | Chr12 | 6292548 | 6292550 | 2 | |
| Deletion | Chr8 | 8771001 | 8803000 | 31999 | 2 |
| Deletion | Chr5 | 14674538 | 14674540 | 2 | |
| Deletion | Chr3 | 20367921 | 20367924 | 3 | |
| Deletion | Chr6 | 25580235 | 25580238 | 3 | OsKitaake06g227400 |
| Deletion | Chr7 | 25810402 | 25810405 | 3 | OsKitaake07g235200 |
| Deletion | Chr4 | 29482109 | 29482121 | 12 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 17731886 | 17731889 | 2 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 24669022 | 25289354 | OsKitaake03g267300 |