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Mutant Information

Mutant Name	FN3676-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3676-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 4110647 A-G Hetero INTERGENIC
SBS Chr1 4332237 T-C Hetero SYNONYMOUS_CODING
SBS Chr1 13501635 G-T Hetero START_GAINED
SBS Chr1 18791273 C-A Hetero INTERGENIC
SBS Chr1 29826952 C-T Homo INTRON
SBS Chr1 38065864 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g405700
SBS Chr2 1981087 C-T Hetero INTRON
SBS Chr2 2231865 G-A Hetero INTERGENIC
SBS Chr2 10203660 G-T Hetero INTERGENIC
SBS Chr2 10279951 A-G Hetero INTERGENIC
SBS Chr3 2870832 G-A Hetero INTERGENIC
SBS Chr3 5421428 G-A Hetero INTERGENIC
SBS Chr3 9180277 C-A Hetero INTERGENIC
SBS Chr3 25399711 G-T Homo INTERGENIC
SBS Chr3 33529961 G-C Homo INTRON
SBS Chr3 36621913 A-T Hetero INTERGENIC
SBS Chr4 10861132 G-A Homo INTERGENIC
SBS Chr4 12989853 C-T Homo UTR_5_PRIME
SBS Chr4 20361948 A-T Homo INTERGENIC
SBS Chr4 23449007 C-T Homo INTERGENIC
SBS Chr5 13611842 A-C Hetero INTERGENIC
SBS Chr5 18558860 G-A Hetero SPLICE_SITE_REGION
SBS Chr6 4869878 T-C Hetero INTERGENIC
SBS Chr6 15636042 G-A Homo INTERGENIC
SBS Chr7 5829303 A-G Hetero INTERGENIC
SBS Chr8 12018832 T-A Homo INTERGENIC
SBS Chr8 16580884 T-A Homo INTERGENIC
SBS Chr9 3074991 G-A Hetero INTERGENIC
SBS Chr9 16456011 C-G Hetero INTERGENIC
SBS Chr9 21598542 A-G Hetero INTRON
SBS Chr9 22017565 C-T Hetero INTERGENIC
SBS Chr10 7281431 T-C Hetero INTERGENIC
SBS Chr10 8549616 T-C Hetero INTERGENIC
SBS Chr11 505076 G-T Homo UTR_3_PRIME
SBS Chr11 6135216 T-C Hetero INTERGENIC
SBS Chr11 7805515 A-G Homo INTERGENIC
SBS Chr11 18997456 G-A Hetero INTERGENIC
SBS Chr11 28211428 T-C Hetero INTERGENIC
SBS Chr12 1087828 A-G Hetero INTERGENIC
SBS Chr12 10699881 C-T Hetero INTERGENIC
SBS Chr12 16804899 G-A Hetero INTERGENIC
SBS Chr12 26931246 A-G Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr5 782904 782908 4
Deletion Chr1 3616001 3707000 90999 9
Deletion Chr12 4832353 4832356 3
Deletion Chr3 6107371 6107378 7 OsKitaake03g087400
Deletion Chr9 6136775 6136776 1
Deletion Chr3 6491136 6491137 1
Deletion Chr8 7209530 7209532 2
Deletion Chr2 9970001 9988000 17999 2
Deletion Chr5 10069949 10069955 6
Deletion Chr8 22980580 22980582 2
Deletion Chr12 26505921 26505929 8
Deletion Chr1 26860075 26860084 9

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 30445616 30445621 4
Insertion Chr7 618898 618901 2
Insertion Chr9 11683417 11683419 1
Insertion Chr8 1411838 1411840 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 6226661 6418926
Inversion Chr12 6226666 6418928

Translocations: 3

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 146714 Chr1 17376725 OsKitaake01g179000
Translocation Chr10 146719 Chr1 17426297
Translocation Chr5 13724926 Chr4 15535905

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	4110647	A-G	Hetero	INTERGENIC
SBS	Chr1	4332237	T-C	Hetero	SYNONYMOUS_CODING
SBS	Chr1	13501635	G-T	Hetero	START_GAINED
SBS	Chr1	18791273	C-A	Hetero	INTERGENIC
SBS	Chr1	29826952	C-T	Homo	INTRON
SBS	Chr1	38065864	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g405700
SBS	Chr2	1981087	C-T	Hetero	INTRON
SBS	Chr2	2231865	G-A	Hetero	INTERGENIC
SBS	Chr2	10203660	G-T	Hetero	INTERGENIC
SBS	Chr2	10279951	A-G	Hetero	INTERGENIC
SBS	Chr3	2870832	G-A	Hetero	INTERGENIC
SBS	Chr3	5421428	G-A	Hetero	INTERGENIC
SBS	Chr3	9180277	C-A	Hetero	INTERGENIC
SBS	Chr3	25399711	G-T	Homo	INTERGENIC
SBS	Chr3	33529961	G-C	Homo	INTRON
SBS	Chr3	36621913	A-T	Hetero	INTERGENIC
SBS	Chr4	10861132	G-A	Homo	INTERGENIC
SBS	Chr4	12989853	C-T	Homo	UTR_5_PRIME
SBS	Chr4	20361948	A-T	Homo	INTERGENIC
SBS	Chr4	23449007	C-T	Homo	INTERGENIC
SBS	Chr5	13611842	A-C	Hetero	INTERGENIC
SBS	Chr5	18558860	G-A	Hetero	SPLICE_SITE_REGION
SBS	Chr6	4869878	T-C	Hetero	INTERGENIC
SBS	Chr6	15636042	G-A	Homo	INTERGENIC
SBS	Chr7	5829303	A-G	Hetero	INTERGENIC
SBS	Chr8	12018832	T-A	Homo	INTERGENIC
SBS	Chr8	16580884	T-A	Homo	INTERGENIC
SBS	Chr9	3074991	G-A	Hetero	INTERGENIC
SBS	Chr9	16456011	C-G	Hetero	INTERGENIC
SBS	Chr9	21598542	A-G	Hetero	INTRON
SBS	Chr9	22017565	C-T	Hetero	INTERGENIC
SBS	Chr10	7281431	T-C	Hetero	INTERGENIC
SBS	Chr10	8549616	T-C	Hetero	INTERGENIC
SBS	Chr11	505076	G-T	Homo	UTR_3_PRIME
SBS	Chr11	6135216	T-C	Hetero	INTERGENIC
SBS	Chr11	7805515	A-G	Homo	INTERGENIC
SBS	Chr11	18997456	G-A	Hetero	INTERGENIC
SBS	Chr11	28211428	T-C	Hetero	INTERGENIC
SBS	Chr12	1087828	A-G	Hetero	INTERGENIC
SBS	Chr12	10699881	C-T	Hetero	INTERGENIC
SBS	Chr12	16804899	G-A	Hetero	INTERGENIC
SBS	Chr12	26931246	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr5	782904	782908	4
Deletion	Chr1	3616001	3707000	90999	9
Deletion	Chr12	4832353	4832356	3
Deletion	Chr3	6107371	6107378	7	OsKitaake03g087400
Deletion	Chr9	6136775	6136776	1
Deletion	Chr3	6491136	6491137	1
Deletion	Chr8	7209530	7209532	2
Deletion	Chr2	9970001	9988000	17999	2
Deletion	Chr5	10069949	10069955	6
Deletion	Chr8	22980580	22980582	2
Deletion	Chr12	26505921	26505929	8
Deletion	Chr1	26860075	26860084	9

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	6226661	6418926
Inversion	Chr12	6226666	6418928

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes