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Mutant Information

Mutant Name	FN3677-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3677-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6475973 G-A Hetero INTERGENIC
SBS Chr1 11761224 C-T Hetero INTERGENIC
SBS Chr1 12238570 G-A Hetero INTERGENIC
SBS Chr1 17299168 C-G Hetero INTERGENIC
SBS Chr1 18881841 C-T Hetero INTERGENIC
SBS Chr1 20959084 G-A Hetero UTR_3_PRIME
SBS Chr1 22216396 C-T Hetero INTERGENIC
SBS Chr1 35078269 G-A Hetero INTERGENIC
SBS Chr2 1969508 G-A Hetero INTERGENIC
SBS Chr2 8114825 G-A Hetero INTERGENIC
SBS Chr2 14672057 C-T Hetero INTERGENIC
SBS Chr2 23422478 G-A Hetero INTERGENIC
SBS Chr2 30260359 G-A Hetero INTERGENIC
SBS Chr2 31873814 G-A Hetero INTERGENIC
SBS Chr4 12827140 T-C Hetero INTERGENIC
SBS Chr4 16616927 C-T Hetero INTERGENIC
SBS Chr4 16914137 G-A Hetero INTERGENIC
SBS Chr4 18493470 G-A Hetero INTERGENIC
SBS Chr4 31171055 G-A Hetero INTERGENIC
SBS Chr5 2824084 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 3522621 A-C Hetero INTRON
SBS Chr5 17625942 G-A Homo INTERGENIC
SBS Chr5 22329404 A-T Hetero INTERGENIC
SBS Chr6 2784445 G-T Homo UTR_5_PRIME
SBS Chr6 9577890 G-T Hetero INTERGENIC
SBS Chr6 13498127 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g141900
SBS Chr6 25533294 A-G Hetero INTRON
SBS Chr7 8980559 G-T Hetero INTERGENIC
SBS Chr7 13690082 G-C Hetero INTERGENIC
SBS Chr7 14152654 T-A Hetero INTERGENIC
SBS Chr7 14637859 C-A Hetero INTERGENIC
SBS Chr7 15434762 G-A Hetero UTR_3_PRIME
SBS Chr7 21399627 C-T Hetero INTERGENIC
SBS Chr8 23737339 G-C Hetero INTERGENIC
SBS Chr9 6224321 G-A Hetero INTERGENIC
SBS Chr9 9071598 T-C Hetero UTR_5_PRIME
SBS Chr10 2560339 C-T Hetero INTERGENIC
SBS Chr10 9562209 C-G Homo INTERGENIC
SBS Chr10 14405292 G-A Homo INTERGENIC
SBS Chr11 6359746 C-A Hetero UTR_3_PRIME
SBS Chr11 6365818 C-A Hetero INTERGENIC
SBS Chr12 1367996 A-G Hetero SYNONYMOUS_CODING
SBS Chr12 19843101 G-A Hetero INTERGENIC

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 929203 929208 5
Deletion Chr1 2661369 2661372 3
Deletion Chr1 3904062 3904069 7
Deletion Chr2 4819696 4819702 6
Deletion Chr10 5232394 5232397 3
Deletion Chr4 6093455 6093457 2 OsKitaake04g030500
Deletion Chr10 7432455 7432483 28
Deletion Chr1 7516736 7516743 7
Deletion Chr6 8677001 8694000 16999
Deletion Chr10 9056229 9056234 5
Deletion Chr10 9272810 9272853 43
Deletion Chr4 10784636 10784657 21
Deletion Chr10 15542866 15542875 9
Deletion Chr7 22584476 22584482 6
Deletion Chr5 23692711 23692712 1
Deletion Chr3 26645460 26645461 1
Deletion Chr5 29714625 29714629 4
Deletion Chr1 38637198 38637200 2

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 7715811 7715813 1
Insertion Chr9 2927565 2927568 2
Insertion Chr12 16122257 16122260 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 12768527 13256194 OsKitaake07g117000
Inversion Chr10 19623965 19774656 2
Inversion Chr10 19623968 19774669 2
Inversion Chr4 31044335 31947378 OsKitaake04g241300

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 8164255 Chr1 19625616 2
Translocation Chr6 8694341 Chr5 10684939
Translocation Chr6 8695597 Chr5 10684940
Translocation Chr4 23156060 Chr1 31008425 OsKitaake04g141000
Translocation Chr4 23156062 Chr1 31008411 OsKitaake04g141000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6475973	G-A	Hetero	INTERGENIC
SBS	Chr1	11761224	C-T	Hetero	INTERGENIC
SBS	Chr1	12238570	G-A	Hetero	INTERGENIC
SBS	Chr1	17299168	C-G	Hetero	INTERGENIC
SBS	Chr1	18881841	C-T	Hetero	INTERGENIC
SBS	Chr1	20959084	G-A	Hetero	UTR_3_PRIME
SBS	Chr1	22216396	C-T	Hetero	INTERGENIC
SBS	Chr1	35078269	G-A	Hetero	INTERGENIC
SBS	Chr2	1969508	G-A	Hetero	INTERGENIC
SBS	Chr2	8114825	G-A	Hetero	INTERGENIC
SBS	Chr2	14672057	C-T	Hetero	INTERGENIC
SBS	Chr2	23422478	G-A	Hetero	INTERGENIC
SBS	Chr2	30260359	G-A	Hetero	INTERGENIC
SBS	Chr2	31873814	G-A	Hetero	INTERGENIC
SBS	Chr4	12827140	T-C	Hetero	INTERGENIC
SBS	Chr4	16616927	C-T	Hetero	INTERGENIC
SBS	Chr4	16914137	G-A	Hetero	INTERGENIC
SBS	Chr4	18493470	G-A	Hetero	INTERGENIC
SBS	Chr4	31171055	G-A	Hetero	INTERGENIC
SBS	Chr5	2824084	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	3522621	A-C	Hetero	INTRON
SBS	Chr5	17625942	G-A	Homo	INTERGENIC
SBS	Chr5	22329404	A-T	Hetero	INTERGENIC
SBS	Chr6	2784445	G-T	Homo	UTR_5_PRIME
SBS	Chr6	9577890	G-T	Hetero	INTERGENIC
SBS	Chr6	13498127	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g141900
SBS	Chr6	25533294	A-G	Hetero	INTRON
SBS	Chr7	8980559	G-T	Hetero	INTERGENIC
SBS	Chr7	13690082	G-C	Hetero	INTERGENIC
SBS	Chr7	14152654	T-A	Hetero	INTERGENIC
SBS	Chr7	14637859	C-A	Hetero	INTERGENIC
SBS	Chr7	15434762	G-A	Hetero	UTR_3_PRIME
SBS	Chr7	21399627	C-T	Hetero	INTERGENIC
SBS	Chr8	23737339	G-C	Hetero	INTERGENIC
SBS	Chr9	6224321	G-A	Hetero	INTERGENIC
SBS	Chr9	9071598	T-C	Hetero	UTR_5_PRIME
SBS	Chr10	2560339	C-T	Hetero	INTERGENIC
SBS	Chr10	9562209	C-G	Homo	INTERGENIC
SBS	Chr10	14405292	G-A	Homo	INTERGENIC
SBS	Chr11	6359746	C-A	Hetero	UTR_3_PRIME
SBS	Chr11	6365818	C-A	Hetero	INTERGENIC
SBS	Chr12	1367996	A-G	Hetero	SYNONYMOUS_CODING
SBS	Chr12	19843101	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	929203	929208	5
Deletion	Chr1	2661369	2661372	3
Deletion	Chr1	3904062	3904069	7
Deletion	Chr2	4819696	4819702	6
Deletion	Chr10	5232394	5232397	3
Deletion	Chr4	6093455	6093457	2	OsKitaake04g030500
Deletion	Chr10	7432455	7432483	28
Deletion	Chr1	7516736	7516743	7
Deletion	Chr6	8677001	8694000	16999
Deletion	Chr10	9056229	9056234	5
Deletion	Chr10	9272810	9272853	43
Deletion	Chr4	10784636	10784657	21
Deletion	Chr10	15542866	15542875	9
Deletion	Chr7	22584476	22584482	6
Deletion	Chr5	23692711	23692712	1
Deletion	Chr3	26645460	26645461	1
Deletion	Chr5	29714625	29714629	4
Deletion	Chr1	38637198	38637200	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	12768527	13256194	OsKitaake07g117000
Inversion	Chr10	19623965	19774656	2
Inversion	Chr10	19623968	19774669	2
Inversion	Chr4	31044335	31947378	OsKitaake04g241300

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes