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Mutant Information

Mutant Name	FN3678-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3678-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 45

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 2714164 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g034000
SBS Chr1 31456428 G-T Hetero INTERGENIC
SBS Chr1 35488024 C-T Hetero INTERGENIC
SBS Chr1 38085203 C-T Hetero INTRON
SBS Chr1 42948042 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g473400
SBS Chr2 4653623 C-T Hetero INTERGENIC
SBS Chr2 6309387 A-T Hetero INTERGENIC
SBS Chr2 10511911 C-T Hetero INTERGENIC
SBS Chr2 17633323 T-C Hetero INTERGENIC
SBS Chr2 20876634 T-A Hetero INTERGENIC
SBS Chr2 22575702 T-A Hetero INTRON
SBS Chr2 27712225 G-A Homo INTERGENIC
SBS Chr2 28685232 C-A Hetero INTERGENIC
SBS Chr3 5849387 C-T Hetero INTRON
SBS Chr3 10151203 C-T Hetero INTERGENIC
SBS Chr3 11367481 C-T Hetero UTR_3_PRIME
SBS Chr3 11382499 A-T Hetero INTRON
SBS Chr3 37655769 G-A Hetero INTERGENIC
SBS Chr4 15970803 C-T Hetero INTERGENIC
SBS Chr4 19623506 G-T Hetero INTERGENIC
SBS Chr4 19750430 C-A Hetero INTERGENIC
SBS Chr4 22342021 C-T Hetero INTERGENIC
SBS Chr4 22718947 T-A Hetero INTRON
SBS Chr4 26438114 C-T Hetero SYNONYMOUS_CODING
SBS Chr4 31084591 G-A Hetero INTERGENIC
SBS Chr5 4326093 C-T Hetero INTERGENIC
SBS Chr5 17702966 C-A Hetero INTERGENIC
SBS Chr5 18454496 G-A Hetero INTERGENIC
SBS Chr5 21810083 A-G Hetero UTR_3_PRIME
SBS Chr7 1567070 G-T Hetero INTERGENIC
SBS Chr7 10416800 C-T Hetero INTERGENIC
SBS Chr7 28751085 A-G Hetero INTRON
SBS Chr8 10380762 A-G Homo INTERGENIC
SBS Chr8 22686321 G-A Homo INTERGENIC
SBS Chr8 22719503 T-A Hetero INTERGENIC
SBS Chr9 1820295 T-A Hetero INTERGENIC
SBS Chr9 5402731 C-T Hetero INTERGENIC
SBS Chr9 17764252 C-T Hetero INTERGENIC
SBS Chr10 508815 A-C Hetero INTERGENIC
SBS Chr10 3839041 C-T Hetero SYNONYMOUS_CODING
SBS Chr11 9519208 T-G Hetero INTERGENIC
SBS Chr11 16558624 C-T Hetero INTERGENIC
SBS Chr11 17549153 G-A Hetero INTERGENIC
SBS Chr11 25221854 G-T Hetero INTERGENIC
SBS Chr12 18300031 A-T Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1628860 1628866 6 OsKitaake10g011500
Deletion Chr5 2094937 2094942 5 OsKitaake05g023400
Deletion Chr7 7004861 7004867 6
Deletion Chr12 8959630 8959651 21
Deletion Chr2 9060136 9060139 3
Deletion Chr8 10373723 10373731 8
Deletion Chr9 12290197 12290199 2
Deletion Chr4 17047611 17047617 6
Deletion Chr6 26182356 26182358 2
Deletion Chr5 27630214 27630221 7
Deletion Chr2 34752332 34752333 1
Deletion Chr2 35927547 35927549 2

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 12265059 12265062 2
Insertion Chr2 16616671 16616674 2
Insertion Chr2 23170972 23170977 4
Insertion Chr8 16578946 16578949 2
Insertion Chr10 11764868 11764871 2
Insertion Chr11 11876774 11876777 2
Insertion Chr12 9284423 9284426 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr10 3167333 3185053 OsKitaake10g025700
Inversion Chr10 3185042 3300643

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr11 11096913 Chr1 29042429 OsKitaake01g281901
Translocation Chr11 11096916 Chr1 29043426 OsKitaake01g281901

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	2714164	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g034000
SBS	Chr1	31456428	G-T	Hetero	INTERGENIC
SBS	Chr1	35488024	C-T	Hetero	INTERGENIC
SBS	Chr1	38085203	C-T	Hetero	INTRON
SBS	Chr1	42948042	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g473400
SBS	Chr2	4653623	C-T	Hetero	INTERGENIC
SBS	Chr2	6309387	A-T	Hetero	INTERGENIC
SBS	Chr2	10511911	C-T	Hetero	INTERGENIC
SBS	Chr2	17633323	T-C	Hetero	INTERGENIC
SBS	Chr2	20876634	T-A	Hetero	INTERGENIC
SBS	Chr2	22575702	T-A	Hetero	INTRON
SBS	Chr2	27712225	G-A	Homo	INTERGENIC
SBS	Chr2	28685232	C-A	Hetero	INTERGENIC
SBS	Chr3	5849387	C-T	Hetero	INTRON
SBS	Chr3	10151203	C-T	Hetero	INTERGENIC
SBS	Chr3	11367481	C-T	Hetero	UTR_3_PRIME
SBS	Chr3	11382499	A-T	Hetero	INTRON
SBS	Chr3	37655769	G-A	Hetero	INTERGENIC
SBS	Chr4	15970803	C-T	Hetero	INTERGENIC
SBS	Chr4	19623506	G-T	Hetero	INTERGENIC
SBS	Chr4	19750430	C-A	Hetero	INTERGENIC
SBS	Chr4	22342021	C-T	Hetero	INTERGENIC
SBS	Chr4	22718947	T-A	Hetero	INTRON
SBS	Chr4	26438114	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr4	31084591	G-A	Hetero	INTERGENIC
SBS	Chr5	4326093	C-T	Hetero	INTERGENIC
SBS	Chr5	17702966	C-A	Hetero	INTERGENIC
SBS	Chr5	18454496	G-A	Hetero	INTERGENIC
SBS	Chr5	21810083	A-G	Hetero	UTR_3_PRIME
SBS	Chr7	1567070	G-T	Hetero	INTERGENIC
SBS	Chr7	10416800	C-T	Hetero	INTERGENIC
SBS	Chr7	28751085	A-G	Hetero	INTRON
SBS	Chr8	10380762	A-G	Homo	INTERGENIC
SBS	Chr8	22686321	G-A	Homo	INTERGENIC
SBS	Chr8	22719503	T-A	Hetero	INTERGENIC
SBS	Chr9	1820295	T-A	Hetero	INTERGENIC
SBS	Chr9	5402731	C-T	Hetero	INTERGENIC
SBS	Chr9	17764252	C-T	Hetero	INTERGENIC
SBS	Chr10	508815	A-C	Hetero	INTERGENIC
SBS	Chr10	3839041	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr11	9519208	T-G	Hetero	INTERGENIC
SBS	Chr11	16558624	C-T	Hetero	INTERGENIC
SBS	Chr11	17549153	G-A	Hetero	INTERGENIC
SBS	Chr11	25221854	G-T	Hetero	INTERGENIC
SBS	Chr12	18300031	A-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1628860	1628866	6	OsKitaake10g011500
Deletion	Chr5	2094937	2094942	5	OsKitaake05g023400
Deletion	Chr7	7004861	7004867	6
Deletion	Chr12	8959630	8959651	21
Deletion	Chr2	9060136	9060139	3
Deletion	Chr8	10373723	10373731	8
Deletion	Chr9	12290197	12290199	2
Deletion	Chr4	17047611	17047617	6
Deletion	Chr6	26182356	26182358	2
Deletion	Chr5	27630214	27630221	7
Deletion	Chr2	34752332	34752333	1
Deletion	Chr2	35927547	35927549	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr10	3167333	3185053	OsKitaake10g025700
Inversion	Chr10	3185042	3300643

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes