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Mutant Information

Mutant Name	FN3679-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3679-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 42

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 36117977 T-C Hetero INTERGENIC
SBS Chr2 8306031 G-A Homo UTR_3_PRIME
SBS Chr2 21501464 A-G Hetero INTERGENIC
SBS Chr3 7714571 G-A Hetero INTERGENIC
SBS Chr3 16793047 G-A Hetero INTERGENIC
SBS Chr3 17306216 G-C Homo INTERGENIC
SBS Chr3 24901710 T-C Homo INTERGENIC
SBS Chr3 28021452 C-T Homo INTERGENIC
SBS Chr3 34954133 T-C Hetero INTRON
SBS Chr3 35635271 A-G Hetero INTERGENIC
SBS Chr4 13343669 G-A Hetero INTERGENIC
SBS Chr5 573244 A-C Hetero NON_SYNONYMOUS_CODING OsKitaake05g006100
SBS Chr5 15884507 C-T Hetero INTERGENIC
SBS Chr5 17781096 C-T Hetero INTERGENIC
SBS Chr6 5636092 C-A Homo INTERGENIC
SBS Chr6 11319963 T-C Hetero INTERGENIC
SBS Chr6 13780781 A-G Hetero INTERGENIC
SBS Chr6 24990720 C-A Hetero INTERGENIC
SBS Chr6 25984839 G-A Homo INTERGENIC
SBS Chr6 26199216 G-A Hetero INTERGENIC
SBS Chr6 26363518 A-T Hetero INTERGENIC
SBS Chr6 28698141 A-T Hetero INTERGENIC
SBS Chr7 2246528 A-C Hetero INTERGENIC
SBS Chr7 29006004 C-T Hetero INTERGENIC
SBS Chr8 1315526 T-C Hetero INTERGENIC
SBS Chr8 3401521 T-G Hetero INTRON
SBS Chr8 6187392 A-G Hetero INTERGENIC
SBS Chr8 19417724 C-T Hetero INTERGENIC
SBS Chr8 21058999 C-T Hetero INTERGENIC
SBS Chr8 27280506 A-G Hetero UTR_3_PRIME
SBS Chr9 3077184 C-T Hetero INTERGENIC
SBS Chr9 12374016 G-A Hetero INTERGENIC
SBS Chr9 21392831 A-G Hetero INTERGENIC
SBS Chr10 4224648 G-A Hetero INTERGENIC
SBS Chr10 10945995 G-A Hetero INTERGENIC
SBS Chr10 13265018 C-T Hetero INTERGENIC
SBS Chr10 13706707 G-A Hetero INTERGENIC
SBS Chr11 16810353 G-C Homo INTERGENIC
SBS Chr11 26956878 C-G Hetero INTERGENIC
SBS Chr12 4321186 G-C Hetero INTERGENIC
SBS Chr12 20484500 C-T Hetero INTERGENIC
SBS Chr12 24728354 G-A Hetero INTERGENIC

Deletions: 17

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 82135 82138 3
Deletion Chr1 1335441 1335448 7
Deletion Chr1 4040901 4040903 2
Deletion Chr1 4556382 4556384 2
Deletion Chr6 7329963 7329981 18
Deletion Chr10 12318456 12318457 1
Deletion Chr10 12326172 12326180 8 OsKitaake10g074000
Deletion Chr8 16154602 16154603 1
Deletion Chr8 18124094 18124095 1
Deletion Chr9 19190416 19190426 10 OsKitaake09g154400
Deletion Chr9 22266739 22266747 8
Deletion Chr4 26744046 26744047 1
Deletion Chr5 28010651 28010660 9
Deletion Chr11 28910329 28910333 4
Deletion Chr4 29117140 29117168 28
Deletion Chr3 29266926 29266927 1 OsKitaake03g304900
Deletion Chr5 29983455 29983456 1

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 41606577 41606581 3
Insertion Chr3 17738559 17738562 2
Insertion Chr4 20312345 20312349 3
Insertion Chr4 31191711 31191718 6
Insertion Chr4 32071918 32071921 2
Insertion Chr5 24953053 24953058 4
Insertion Chr5 30090600 30090602 1
Insertion Chr9 5309883 5309888 4

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 6476756 6495903 2
Inversion Chr3 6476773 6495911 2
Inversion Chr11 28587565 28605262 2
Inversion Chr11 28587594 28605312 2

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 15652772 Chr1 18083723
Translocation Chr5 15652782 Chr1 18068190 OsKitaake01g182600
Translocation Chr8 26070668 Chr2 28103336
Translocation Chr8 26073094 Chr2 28103330

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	36117977	T-C	Hetero	INTERGENIC
SBS	Chr2	8306031	G-A	Homo	UTR_3_PRIME
SBS	Chr2	21501464	A-G	Hetero	INTERGENIC
SBS	Chr3	7714571	G-A	Hetero	INTERGENIC
SBS	Chr3	16793047	G-A	Hetero	INTERGENIC
SBS	Chr3	17306216	G-C	Homo	INTERGENIC
SBS	Chr3	24901710	T-C	Homo	INTERGENIC
SBS	Chr3	28021452	C-T	Homo	INTERGENIC
SBS	Chr3	34954133	T-C	Hetero	INTRON
SBS	Chr3	35635271	A-G	Hetero	INTERGENIC
SBS	Chr4	13343669	G-A	Hetero	INTERGENIC
SBS	Chr5	573244	A-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g006100
SBS	Chr5	15884507	C-T	Hetero	INTERGENIC
SBS	Chr5	17781096	C-T	Hetero	INTERGENIC
SBS	Chr6	5636092	C-A	Homo	INTERGENIC
SBS	Chr6	11319963	T-C	Hetero	INTERGENIC
SBS	Chr6	13780781	A-G	Hetero	INTERGENIC
SBS	Chr6	24990720	C-A	Hetero	INTERGENIC
SBS	Chr6	25984839	G-A	Homo	INTERGENIC
SBS	Chr6	26199216	G-A	Hetero	INTERGENIC
SBS	Chr6	26363518	A-T	Hetero	INTERGENIC
SBS	Chr6	28698141	A-T	Hetero	INTERGENIC
SBS	Chr7	2246528	A-C	Hetero	INTERGENIC
SBS	Chr7	29006004	C-T	Hetero	INTERGENIC
SBS	Chr8	1315526	T-C	Hetero	INTERGENIC
SBS	Chr8	3401521	T-G	Hetero	INTRON
SBS	Chr8	6187392	A-G	Hetero	INTERGENIC
SBS	Chr8	19417724	C-T	Hetero	INTERGENIC
SBS	Chr8	21058999	C-T	Hetero	INTERGENIC
SBS	Chr8	27280506	A-G	Hetero	UTR_3_PRIME
SBS	Chr9	3077184	C-T	Hetero	INTERGENIC
SBS	Chr9	12374016	G-A	Hetero	INTERGENIC
SBS	Chr9	21392831	A-G	Hetero	INTERGENIC
SBS	Chr10	4224648	G-A	Hetero	INTERGENIC
SBS	Chr10	10945995	G-A	Hetero	INTERGENIC
SBS	Chr10	13265018	C-T	Hetero	INTERGENIC
SBS	Chr10	13706707	G-A	Hetero	INTERGENIC
SBS	Chr11	16810353	G-C	Homo	INTERGENIC
SBS	Chr11	26956878	C-G	Hetero	INTERGENIC
SBS	Chr12	4321186	G-C	Hetero	INTERGENIC
SBS	Chr12	20484500	C-T	Hetero	INTERGENIC
SBS	Chr12	24728354	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	82135	82138	3
Deletion	Chr1	1335441	1335448	7
Deletion	Chr1	4040901	4040903	2
Deletion	Chr1	4556382	4556384	2
Deletion	Chr6	7329963	7329981	18
Deletion	Chr10	12318456	12318457	1
Deletion	Chr10	12326172	12326180	8	OsKitaake10g074000
Deletion	Chr8	16154602	16154603	1
Deletion	Chr8	18124094	18124095	1
Deletion	Chr9	19190416	19190426	10	OsKitaake09g154400
Deletion	Chr9	22266739	22266747	8
Deletion	Chr4	26744046	26744047	1
Deletion	Chr5	28010651	28010660	9
Deletion	Chr11	28910329	28910333	4
Deletion	Chr4	29117140	29117168	28
Deletion	Chr3	29266926	29266927	1	OsKitaake03g304900
Deletion	Chr5	29983455	29983456	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	6476756	6495903	2
Inversion	Chr3	6476773	6495911	2
Inversion	Chr11	28587565	28605262	2
Inversion	Chr11	28587594	28605312	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes