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Mutant Information

Mutant Name	FN3681-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3681-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 38

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13814083 T-C Hetero INTERGENIC
SBS Chr1 18453438 C-A Hetero INTRON
SBS Chr1 40797185 T-A Hetero INTERGENIC
SBS Chr1 43873527 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g488500
SBS Chr2 9959315 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake02g120300
SBS Chr2 14734177 G-A Hetero INTERGENIC
SBS Chr2 18889442 A-G Hetero INTRON
SBS Chr2 20313858 C-T Hetero INTRON
SBS Chr2 22344303 C-A Homo INTERGENIC
SBS Chr2 35534753 C-T Homo INTRON
SBS Chr4 32891458 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g266100
SBS Chr4 34688782 C-T Hetero INTERGENIC
SBS Chr5 3755007 C-T Hetero INTERGENIC
SBS Chr5 6175947 C-T Hetero INTERGENIC
SBS Chr5 30175904 A-T Hetero INTERGENIC
SBS Chr6 542115 G-A Hetero INTRON
SBS Chr6 1875957 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake06g023200
SBS Chr6 27446861 C-G Hetero INTRON
SBS Chr6 28037631 A-G Hetero INTERGENIC
SBS Chr6 30898424 G-A Hetero UTR_5_PRIME
SBS Chr7 9492659 T-A Hetero INTRON
SBS Chr7 12772789 A-T Hetero INTERGENIC
SBS Chr7 12772790 C-T Hetero INTERGENIC
SBS Chr7 17806425 A-T Hetero INTERGENIC
SBS Chr7 22713113 A-G Hetero INTERGENIC
SBS Chr9 781296 T-A Hetero INTRON
SBS Chr9 2791718 A-C Hetero INTERGENIC
SBS Chr9 14797661 G-A Homo INTERGENIC
SBS Chr9 15991654 T-A Homo INTRON
SBS Chr10 19652851 A-T Hetero UTR_3_PRIME
SBS Chr10 20775807 T-A Hetero INTRON
SBS Chr11 1823933 C-T Hetero INTERGENIC
SBS Chr11 12674627 G-A Hetero INTERGENIC
SBS Chr11 16780544 T-C Hetero INTERGENIC
SBS Chr11 18016558 T-C Hetero INTERGENIC
SBS Chr11 26813635 T-G Homo INTERGENIC
SBS Chr11 27681051 G-A Homo INTERGENIC
SBS Chr12 21709012 G-A Hetero INTERGENIC

Deletions: 13

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1701266 1701268 2
Deletion Chr11 4083319 4083320 1
Deletion Chr5 4602161 4602164 3
Deletion Chr7 6411125 6411128 3
Deletion Chr8 10767739 10767754 15
Deletion Chr10 14554786 14554794 8
Deletion Chr8 19257235 19257242 7
Deletion Chr9 20863517 20863522 5
Deletion Chr2 25430662 25430676 14
Deletion Chr8 28011846 28011854 8
Deletion Chr6 28579127 28579128 1
Deletion Chr2 33053237 33053239 2
Deletion Chr2 34835385 34835397 12 OsKitaake02g363100

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 3150947 3150949 1
Insertion Chr4 1905776 1905779 2
Insertion Chr6 25500010 25500013 2
Insertion Chr7 21000667 21000671 3
Insertion Chr11 12496351 12496355 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 35832021 35891841 OsKitaake03g394550
Inversion Chr3 35832049 35891854 OsKitaake03g394550

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13814083	T-C	Hetero	INTERGENIC
SBS	Chr1	18453438	C-A	Hetero	INTRON
SBS	Chr1	40797185	T-A	Hetero	INTERGENIC
SBS	Chr1	43873527	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g488500
SBS	Chr2	9959315	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g120300
SBS	Chr2	14734177	G-A	Hetero	INTERGENIC
SBS	Chr2	18889442	A-G	Hetero	INTRON
SBS	Chr2	20313858	C-T	Hetero	INTRON
SBS	Chr2	22344303	C-A	Homo	INTERGENIC
SBS	Chr2	35534753	C-T	Homo	INTRON
SBS	Chr4	32891458	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g266100
SBS	Chr4	34688782	C-T	Hetero	INTERGENIC
SBS	Chr5	3755007	C-T	Hetero	INTERGENIC
SBS	Chr5	6175947	C-T	Hetero	INTERGENIC
SBS	Chr5	30175904	A-T	Hetero	INTERGENIC
SBS	Chr6	542115	G-A	Hetero	INTRON
SBS	Chr6	1875957	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g023200
SBS	Chr6	27446861	C-G	Hetero	INTRON
SBS	Chr6	28037631	A-G	Hetero	INTERGENIC
SBS	Chr6	30898424	G-A	Hetero	UTR_5_PRIME
SBS	Chr7	9492659	T-A	Hetero	INTRON
SBS	Chr7	12772789	A-T	Hetero	INTERGENIC
SBS	Chr7	12772790	C-T	Hetero	INTERGENIC
SBS	Chr7	17806425	A-T	Hetero	INTERGENIC
SBS	Chr7	22713113	A-G	Hetero	INTERGENIC
SBS	Chr9	781296	T-A	Hetero	INTRON
SBS	Chr9	2791718	A-C	Hetero	INTERGENIC
SBS	Chr9	14797661	G-A	Homo	INTERGENIC
SBS	Chr9	15991654	T-A	Homo	INTRON
SBS	Chr10	19652851	A-T	Hetero	UTR_3_PRIME
SBS	Chr10	20775807	T-A	Hetero	INTRON
SBS	Chr11	1823933	C-T	Hetero	INTERGENIC
SBS	Chr11	12674627	G-A	Hetero	INTERGENIC
SBS	Chr11	16780544	T-C	Hetero	INTERGENIC
SBS	Chr11	18016558	T-C	Hetero	INTERGENIC
SBS	Chr11	26813635	T-G	Homo	INTERGENIC
SBS	Chr11	27681051	G-A	Homo	INTERGENIC
SBS	Chr12	21709012	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1701266	1701268	2
Deletion	Chr11	4083319	4083320	1
Deletion	Chr5	4602161	4602164	3
Deletion	Chr7	6411125	6411128	3
Deletion	Chr8	10767739	10767754	15
Deletion	Chr10	14554786	14554794	8
Deletion	Chr8	19257235	19257242	7
Deletion	Chr9	20863517	20863522	5
Deletion	Chr2	25430662	25430676	14
Deletion	Chr8	28011846	28011854	8
Deletion	Chr6	28579127	28579128	1
Deletion	Chr2	33053237	33053239	2
Deletion	Chr2	34835385	34835397	12	OsKitaake02g363100

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	35832021	35891841	OsKitaake03g394550
Inversion	Chr3	35832049	35891854	OsKitaake03g394550

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes