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| Mutant Information |
|---|
| Mutant Name | FN3687-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3687-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 28
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 14272942 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 34946328 | C-A | Homo | UTR_3_PRIME | |
| SBS | Chr1 | 41598883 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr2 | 13467665 | T-C | Homo | INTERGENIC | |
| SBS | Chr2 | 30890247 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 37107799 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 27537941 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 16650639 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 24523385 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 1746044 | A-C | Hetero | INTRON | |
| SBS | Chr6 | 2846507 | C-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 8020464 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 15332104 | T-A | Homo | INTRON | |
| SBS | Chr8 | 23032211 | T-C | Homo | INTERGENIC | |
| SBS | Chr9 | 20362020 | A-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 4998905 | C-G | Homo | UTR_3_PRIME | |
| SBS | Chr10 | 13116783 | T-C | Homo | INTERGENIC | |
| SBS | Chr10 | 13116794 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 15922256 | T-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g104200 |
| SBS | Chr11 | 12866450 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 16087685 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25497020 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 10931684 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 14957595 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 15362968 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 15370861 | C-A | Homo | INTERGENIC | |
| SBS | Chr12 | 15413138 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 22934432 | T-A | Homo | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 1005905 | 1005914 | 9 | |
| Deletion | Chr2 | 4273313 | 4273314 | 1 | |
| Deletion | Chr6 | 4370292 | 4370303 | 11 | OsKitaake06g060100 |
| Deletion | Chr10 | 7869426 | 7869438 | 12 | |
| Deletion | Chr12 | 14024094 | 14024100 | 6 | |
| Deletion | Chr8 | 14512894 | 14512895 | 1 | |
| Deletion | Chr4 | 16881426 | 16881427 | 1 | |
| Deletion | Chr7 | 19442856 | 19442861 | 5 | |
| Deletion | Chr5 | 22606133 | 22606142 | 9 | |
| Deletion | Chr12 | 24245872 | 24245880 | 8 | |
| Deletion | Chr1 | 24309162 | 24309173 | 11 | OsKitaake01g234000 |
| Deletion | Chr6 | 28523001 | 28671000 | 147999 | 21 |
| Deletion | Chr6 | 29211001 | 29806000 | 594999 | 83 |
| Deletion | Chr4 | 34816250 | 34816261 | 11 | |
| Deletion | Chr1 | 34926444 | 34926466 | 22 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 43431302 | 43431307 | 4 | |
| Insertion | Chr6 | 6065224 | 6065227 | 2 | |
| Insertion | Chr12 | 22402251 | 22402253 | 1 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 28520028 | Chr5 | 7196445 | |
| Translocation | Chr6 | 29804543 | Chr5 | 7192486 | 2 |