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Mutant Information

Mutant Name	FN3690-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3690-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 22

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 27335939 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g266100
SBS Chr2 14056551 T-G Homo INTERGENIC
SBS Chr2 16632661 A-T Homo INTERGENIC
SBS Chr3 30609749 A-G Homo INTERGENIC
SBS Chr3 34280105 A-T Homo INTERGENIC
SBS Chr4 11300704 A-T Homo INTERGENIC
SBS Chr4 21551080 A-C Homo NON_SYNONYMOUS_CODING OsKitaake04g121600
SBS Chr6 234267 A-G Homo UTR_3_PRIME
SBS Chr7 3324735 A-T Homo NON_SYNONYMOUS_CODING OsKitaake07g042100
SBS Chr7 26831639 C-T Hetero INTERGENIC
SBS Chr7 29063788 G-A Hetero INTRON
SBS Chr7 29063790 G-C Hetero INTRON
SBS Chr8 723498 C-A Hetero INTERGENIC
SBS Chr9 647174 A-T Hetero INTERGENIC
SBS Chr9 4092915 G-A Hetero INTERGENIC
SBS Chr9 12114233 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake09g078300
SBS Chr9 12846357 C-T Hetero INTERGENIC
SBS Chr9 17879678 C-A Hetero SYNONYMOUS_CODING
SBS Chr10 4121871 A-G Homo NON_SYNONYMOUS_CODING OsKitaake10g031400
SBS Chr10 11260902 T-A Homo INTERGENIC
SBS Chr10 21318120 T-A Hetero INTERGENIC
SBS Chr11 16236239 C-T Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 433521 433523 2
Deletion Chr12 4960542 4960556 14
Deletion Chr4 5186085 5186097 12
Deletion Chr5 7301478 7301479 1
Deletion Chr4 7500318 7500321 3
Deletion Chr6 12107560 12107561 1
Deletion Chr10 19959001 20063000 103999 15
Deletion Chr3 27900388 27900393 5
Deletion Chr3 33312807 33312823 16

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr8 14127168 14127171 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 6202643 6539798

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	27335939	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g266100
SBS	Chr2	14056551	T-G	Homo	INTERGENIC
SBS	Chr2	16632661	A-T	Homo	INTERGENIC
SBS	Chr3	30609749	A-G	Homo	INTERGENIC
SBS	Chr3	34280105	A-T	Homo	INTERGENIC
SBS	Chr4	11300704	A-T	Homo	INTERGENIC
SBS	Chr4	21551080	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g121600
SBS	Chr6	234267	A-G	Homo	UTR_3_PRIME
SBS	Chr7	3324735	A-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g042100
SBS	Chr7	26831639	C-T	Hetero	INTERGENIC
SBS	Chr7	29063788	G-A	Hetero	INTRON
SBS	Chr7	29063790	G-C	Hetero	INTRON
SBS	Chr8	723498	C-A	Hetero	INTERGENIC
SBS	Chr9	647174	A-T	Hetero	INTERGENIC
SBS	Chr9	4092915	G-A	Hetero	INTERGENIC
SBS	Chr9	12114233	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g078300
SBS	Chr9	12846357	C-T	Hetero	INTERGENIC
SBS	Chr9	17879678	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr10	4121871	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g031400
SBS	Chr10	11260902	T-A	Homo	INTERGENIC
SBS	Chr10	21318120	T-A	Hetero	INTERGENIC
SBS	Chr11	16236239	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	433521	433523	2
Deletion	Chr12	4960542	4960556	14
Deletion	Chr4	5186085	5186097	12
Deletion	Chr5	7301478	7301479	1
Deletion	Chr4	7500318	7500321	3
Deletion	Chr6	12107560	12107561	1
Deletion	Chr10	19959001	20063000	103999	15
Deletion	Chr3	27900388	27900393	5
Deletion	Chr3	33312807	33312823	16

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	6202643	6539798

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes