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| Mutant Information |
|---|
| Mutant Name | FN3691-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3691-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 35563415 | C-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake01g376400 |
| SBS | Chr2 | 30565732 | G-A | Hetero | INTRON | |
| SBS | Chr2 | 30565736 | G-A | Hetero | INTRON | |
| SBS | Chr3 | 9247231 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 19702181 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 26881152 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 434011 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 6758498 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 31455014 | G-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 36817177 | G-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 9742228 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 10291206 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 25761960 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 19665566 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 2105771 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 5056011 | A-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 21036720 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 5423204 | G-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 9749109 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 18543280 | A-G | Homo | INTERGENIC | |
| SBS | Chr12 | 6225733 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 15707518 | A-T | Homo | INTERGENIC |
Deletions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 2733164 | 2733167 | 3 | OsKitaake03g038600 |
| Deletion | Chr7 | 5277217 | 5277219 | 2 | |
| Deletion | Chr11 | 25371553 | 25371554 | 1 | |
| Deletion | Chr6 | 26592620 | 26592621 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr6 | 27836531 | 27836534 | 2 | |
| Insertion | Chr11 | 25796822 | 25796827 | 4 | |
| Insertion | Chr8 | 2514933 | 2514935 | 1 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 21115792 | 21309347 | OsKitaake09g184100 |
| Inversion | Chr9 | 21115826 | 21309347 | OsKitaake09g184100 |
| Inversion | Chr4 | 32142165 | 32444001 | OsKitaake04g255500 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 32142186 | Chr2 | 2679388 | 2 |