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| Mutant Information |
|---|
| Mutant Name | FN3692-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3692-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr2 | 52445 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 5197637 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 10638981 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 10638982 | A-T | Hetero | INTRON | |
| SBS | Chr2 | 31102084 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 5044174 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 9891731 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 11602411 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 14598185 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 15474160 | G-C | Hetero | INTERGENIC | |
| SBS | Chr5 | 23793529 | T-C | Hetero | INTRON | |
| SBS | Chr5 | 24068344 | G-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 2366261 | C-G | Hetero | INTRON | |
| SBS | Chr6 | 10596001 | T-C | Homo | SPLICE_SITE_REGION | |
| SBS | Chr6 | 15977952 | A-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 17397846 | C-T | Hetero | INTERGENIC | |
| SBS | Chr6 | 26424666 | C-G | Hetero | INTRON | |
| SBS | Chr8 | 2513778 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 9921446 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 25199965 | T-A | Homo | INTERGENIC | |
| SBS | Chr9 | 16017492 | T-G | Hetero | INTERGENIC | |
| SBS | Chr9 | 18303580 | C-T | Hetero | INTRON | |
| SBS | Chr10 | 19104267 | G-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 20308064 | T-C | Hetero | INTERGENIC | |
| SBS | Chr10 | 23571198 | G-A | Hetero | INTRON | |
| SBS | Chr10 | 23571199 | C-G | Hetero | INTRON | |
| SBS | Chr11 | 11982633 | C-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 2401179 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 8416176 | G-T | Hetero | INTRON | |
| SBS | Chr12 | 13890190 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake12g113900 |
| SBS | Chr12 | 26402663 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 26640082 | A-C | Hetero | INTERGENIC |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 3495742 | 3495746 | 4 | |
| Deletion | Chr7 | 4785573 | 4785577 | 4 | |
| Deletion | Chr11 | 6173001 | 6212000 | 38999 | 7 |
| Deletion | Chr5 | 12981111 | 12981112 | 1 | |
| Deletion | Chr9 | 14341555 | 14341558 | 3 | |
| Deletion | Chr2 | 31096686 | 31096690 | 4 | |
| Deletion | Chr2 | 32335881 | 32335889 | 8 | OsKitaake02g330300 |
| Deletion | Chr2 | 32546603 | 32546604 | 1 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 15609886 | 15609888 | 1 | |
| Insertion | Chr4 | 17130255 | 17130260 | 4 | |
| Insertion | Chr8 | 28456327 | 28456330 | 2 |
Inversions: 7
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr9 | 8830967 | 8885095 | |
| Inversion | Chr9 | 8830976 | 8885099 | |
| Inversion | Chr9 | 18111081 | 18171412 | |
| Inversion | Chr5 | 20588933 | 21065341 | OsKitaake05g169400 |
| Inversion | Chr5 | 20588956 | 21065347 | OsKitaake05g169400 |
| Inversion | Chr6 | 28301717 | 28315279 | |
| Inversion | Chr6 | 28301725 | 28315318 |