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Mutant Information

Mutant Name	FN3693-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3693-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7741008 T-C Hetero INTERGENIC
SBS Chr1 10225752 T-G Homo INTERGENIC
SBS Chr1 16400972 C-T Hetero INTERGENIC
SBS Chr1 25352541 A-G Hetero INTRON
SBS Chr1 28315556 G-A Hetero INTERGENIC
SBS Chr1 40114770 G-A Hetero INTERGENIC
SBS Chr2 3804823 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake02g055100
SBS Chr2 31640116 G-A Hetero INTERGENIC
SBS Chr2 31652748 T-C Hetero INTERGENIC
SBS Chr3 11755148 A-G Hetero INTERGENIC
SBS Chr3 25636434 G-A Hetero INTERGENIC
SBS Chr4 5584221 T-A Hetero INTERGENIC
SBS Chr4 6014413 C-T Hetero INTERGENIC
SBS Chr4 12993247 T-C Hetero INTERGENIC
SBS Chr4 12993248 G-A Hetero INTERGENIC
SBS Chr5 5460072 A-G Hetero INTERGENIC
SBS Chr5 6006393 A-T Hetero INTERGENIC
SBS Chr6 9683212 G-C Hetero INTERGENIC
SBS Chr6 17981947 A-T Homo INTERGENIC
SBS Chr6 21543743 C-T Homo INTERGENIC
SBS Chr6 22751194 A-G Hetero INTERGENIC
SBS Chr7 4727426 A-T Hetero INTERGENIC
SBS Chr7 8950510 T-C Hetero INTRON
SBS Chr7 12783167 A-T Hetero INTERGENIC
SBS Chr8 8987840 C-T Homo INTERGENIC
SBS Chr10 648892 A-G Hetero INTERGENIC
SBS Chr10 5300064 T-C Hetero INTERGENIC
SBS Chr10 12922427 T-G Hetero INTERGENIC
SBS Chr10 20511778 T-C Hetero INTERGENIC
SBS Chr10 21624155 C-T Hetero INTERGENIC
SBS Chr11 23434727 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake11g186700

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr6 16904442 16904449 7
Deletion Chr6 17527648 17527655 7
Deletion Chr2 23145719 23145721 2
Deletion Chr4 25953321 25953322 1
Deletion Chr6 26014209 26014211 2
Deletion Chr7 26777549 26777551 2

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 14390888 14390890 1 OsKitaake02g155775

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7741008	T-C	Hetero	INTERGENIC
SBS	Chr1	10225752	T-G	Homo	INTERGENIC
SBS	Chr1	16400972	C-T	Hetero	INTERGENIC
SBS	Chr1	25352541	A-G	Hetero	INTRON
SBS	Chr1	28315556	G-A	Hetero	INTERGENIC
SBS	Chr1	40114770	G-A	Hetero	INTERGENIC
SBS	Chr2	3804823	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g055100
SBS	Chr2	31640116	G-A	Hetero	INTERGENIC
SBS	Chr2	31652748	T-C	Hetero	INTERGENIC
SBS	Chr3	11755148	A-G	Hetero	INTERGENIC
SBS	Chr3	25636434	G-A	Hetero	INTERGENIC
SBS	Chr4	5584221	T-A	Hetero	INTERGENIC
SBS	Chr4	6014413	C-T	Hetero	INTERGENIC
SBS	Chr4	12993247	T-C	Hetero	INTERGENIC
SBS	Chr4	12993248	G-A	Hetero	INTERGENIC
SBS	Chr5	5460072	A-G	Hetero	INTERGENIC
SBS	Chr5	6006393	A-T	Hetero	INTERGENIC
SBS	Chr6	9683212	G-C	Hetero	INTERGENIC
SBS	Chr6	17981947	A-T	Homo	INTERGENIC
SBS	Chr6	21543743	C-T	Homo	INTERGENIC
SBS	Chr6	22751194	A-G	Hetero	INTERGENIC
SBS	Chr7	4727426	A-T	Hetero	INTERGENIC
SBS	Chr7	8950510	T-C	Hetero	INTRON
SBS	Chr7	12783167	A-T	Hetero	INTERGENIC
SBS	Chr8	8987840	C-T	Homo	INTERGENIC
SBS	Chr10	648892	A-G	Hetero	INTERGENIC
SBS	Chr10	5300064	T-C	Hetero	INTERGENIC
SBS	Chr10	12922427	T-G	Hetero	INTERGENIC
SBS	Chr10	20511778	T-C	Hetero	INTERGENIC
SBS	Chr10	21624155	C-T	Hetero	INTERGENIC
SBS	Chr11	23434727	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g186700

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr6	16904442	16904449	7
Deletion	Chr6	17527648	17527655	7
Deletion	Chr2	23145719	23145721	2
Deletion	Chr4	25953321	25953322	1
Deletion	Chr6	26014209	26014211	2
Deletion	Chr7	26777549	26777551	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes