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| Mutant Information |
|---|
| Mutant Name | FN3694-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3694-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6182656 | G-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 19785906 | A-C | Homo | INTERGENIC | |
| SBS | Chr1 | 19785910 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 22877803 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 13395728 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 545100 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 12884252 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 15829013 | A-G | Hetero | INTRON | |
| SBS | Chr3 | 18030318 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 24033275 | A-T | Hetero | UTR_5_PRIME | |
| SBS | Chr3 | 24033276 | A-T | Hetero | UTR_5_PRIME | |
| SBS | Chr4 | 8075617 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr4 | 30114906 | A-G | Hetero | INTERGENIC | |
| SBS | Chr5 | 9247339 | C-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 9740176 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 24895803 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake05g217500 |
| SBS | Chr5 | 28476853 | A-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 734785 | A-T | Hetero | INTRON | |
| SBS | Chr6 | 1203165 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 14785497 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 14333104 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 23452997 | C-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 24224022 | A-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 25647937 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g233600 |
| SBS | Chr7 | 29431336 | C-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 5627508 | T-G | Homo | INTERGENIC | |
| SBS | Chr9 | 13214844 | T-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 4493030 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 13671822 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 20969225 | A-G | Hetero | INTERGENIC | |
| SBS | Chr12 | 6342308 | A-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 25119575 | G-A | Hetero | INTRON |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 7546461 | 7546462 | 1 | |
| Deletion | Chr5 | 9110001 | 9550000 | 439999 | 24 |
| Deletion | Chr11 | 12493686 | 12493695 | 9 | |
| Deletion | Chr8 | 14941001 | 15102000 | 160999 | 5 |
| Deletion | Chr8 | 16969385 | 16969392 | 7 | OsKitaake08g129100 |
| Deletion | Chr10 | 17824538 | 17824540 | 2 | |
| Deletion | Chr12 | 23495001 | 23523000 | 27999 | 4 |
| Deletion | Chr6 | 24405704 | 24405709 | 5 | |
| Deletion | Chr3 | 26649525 | 26649530 | 5 | |
| Deletion | Chr1 | 30903001 | 30925000 | 21999 | 2 |
| Deletion | Chr1 | 34626483 | 34626489 | 6 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr2 | 29431343 | 29431348 | 4 | |
| Insertion | Chr7 | 26249682 | 26249685 | 2 | |
| Insertion | Chr11 | 4360869 | 4360872 | 2 | |
| Insertion | Chr6 | 11200865 | 11200886 | 20 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 25301960 | 25353104 | |
| Inversion | Chr3 | 25301962 | 25353113 | |
| Inversion | Chr1 | 30904120 | 31020592 | OsKitaake01g309000 |
| Inversion | Chr1 | 30925182 | 31021003 | OsKitaake01g309000 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr8 | 25067727 | Chr4 | 32785108 | OsKitaake04g264600 |
| Translocation | Chr8 | 25068000 | Chr4 | 32785106 | OsKitaake04g264600 |