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| Mutant Information |
|---|
| Mutant Name | FN3695-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3695-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 29
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 25201678 | A-G | Hetero | INTERGENIC | |
| SBS | Chr2 | 7219875 | C-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g096700 |
| SBS | Chr2 | 9452292 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 10373463 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 17515168 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 29078005 | C-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 29698154 | A-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 3944604 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 8951995 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 11684330 | C-A | Homo | INTRON | |
| SBS | Chr3 | 14288922 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 19222884 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14044641 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 14530026 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g069000 |
| SBS | Chr4 | 20885087 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 28964792 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 8371445 | C-A | Homo | INTERGENIC | |
| SBS | Chr5 | 9296760 | G-T | Homo | INTERGENIC | |
| SBS | Chr5 | 21069814 | T-C | Homo | INTERGENIC | |
| SBS | Chr6 | 2531378 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 7394428 | T-G | Homo | INTERGENIC | |
| SBS | Chr7 | 16821974 | C-T | Homo | INTRON | |
| SBS | Chr8 | 9209926 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 13458967 | G-A | Homo | INTERGENIC | |
| SBS | Chr9 | 16399093 | T-A | Homo | INTERGENIC | |
| SBS | Chr10 | 794555 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake10g005200 |
| SBS | Chr11 | 25570731 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 29304456 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 434116 | G-A | Homo | INTERGENIC |
Deletions: 15
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr7 | 839001 | 1085000 | 245999 | 37 |
| Deletion | Chr7 | 2756743 | 2756744 | 1 | |
| Deletion | Chr11 | 3971987 | 3971989 | 2 | |
| Deletion | Chr5 | 5912665 | 5912674 | 9 | |
| Deletion | Chr1 | 6259079 | 6259089 | 10 | |
| Deletion | Chr5 | 20291866 | 20291874 | 8 | |
| Deletion | Chr6 | 23920093 | 23920097 | 4 | |
| Deletion | Chr11 | 25850001 | 25900000 | 49999 | OsKitaake11g208100 |
| Deletion | Chr8 | 26184922 | 26184928 | 6 | |
| Deletion | Chr4 | 27040255 | 27040261 | 6 | |
| Deletion | Chr2 | 29639001 | 29696000 | 56999 | 3 |
| Deletion | Chr3 | 31239527 | 31239532 | 5 | |
| Deletion | Chr4 | 34540116 | 34540128 | 12 | |
| Deletion | Chr4 | 34902312 | 34902320 | 8 | |
| Deletion | Chr1 | 38413835 | 38413856 | 21 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 22442796 | 22442799 | 2 | |
| Insertion | Chr2 | 3126559 | 3126561 | 1 | OsKitaake02g044700  |
| Insertion | Chr3 | 27121662 | 27121665 | 2 | |
| Insertion | Chr8 | 20958018 | 20958021 | 2 | |
| Insertion | Chr10 | 9408873 | 9408875 | 1 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr4 | 29845073 | 29961750 | |
| Inversion | Chr4 | 29942799 | 29961635 | OsKitaake04g230000 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr4 | 29840657 | Chr2 | 36068086 | |
| Translocation | Chr4 | 29845067 | Chr2 | 36068095 |