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Mutant Information

Mutant Name	FN3696-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3696-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 697854 C-T Hetero INTERGENIC
SBS Chr1 697855 G-T Hetero INTERGENIC
SBS Chr1 3587402 A-T Hetero INTERGENIC
SBS Chr1 18380936 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake01g184500
SBS Chr1 18427081 T-A Hetero STOP_GAINED OsKitaake01g185000
SBS Chr1 40595323 C-A Hetero SYNONYMOUS_CODING
SBS Chr1 40595325 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g441000
SBS Chr2 13700775 G-A Hetero INTERGENIC
SBS Chr3 26484847 C-T Homo SYNONYMOUS_CODING
SBS Chr3 28840824 C-T Homo INTERGENIC
SBS Chr4 7571559 G-A Hetero INTERGENIC
SBS Chr4 9165725 C-T Homo INTERGENIC
SBS Chr4 19433765 G-A Hetero INTERGENIC
SBS Chr5 4389573 G-A Hetero INTERGENIC
SBS Chr5 8362089 C-A Hetero INTERGENIC
SBS Chr5 8524516 T-A Homo INTERGENIC
SBS Chr5 17012322 G-T Homo INTRON
SBS Chr6 13382748 T-A Hetero INTERGENIC
SBS Chr6 18280969 A-G Hetero INTERGENIC
SBS Chr6 22284224 G-A Hetero INTERGENIC
SBS Chr7 10541520 C-A Hetero INTERGENIC
SBS Chr7 27235034 G-A Homo INTERGENIC
SBS Chr8 2316900 C-T Hetero INTERGENIC
SBS Chr8 2485768 G-T Hetero INTERGENIC
SBS Chr8 6004424 A-G Hetero INTERGENIC
SBS Chr8 10914278 G-A Hetero INTERGENIC
SBS Chr8 17195283 T-A Hetero INTERGENIC
SBS Chr8 20476519 G-A Homo INTERGENIC
SBS Chr8 24341683 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake08g187900
SBS Chr9 5890195 G-A Homo INTERGENIC
SBS Chr10 11277136 G-A Homo INTERGENIC
SBS Chr10 12366972 A-T Hetero INTERGENIC
SBS Chr11 2695559 T-G Hetero INTERGENIC
SBS Chr12 9440686 C-A Hetero INTERGENIC
SBS Chr12 26686750 A-C Homo INTERGENIC

Deletions: 14

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 3755535 3755536 1
Deletion Chr6 3836988 3836994 6
Deletion Chr2 3916001 3944000 27999 7
Deletion Chr2 4182327 4182331 4
Deletion Chr6 10152330 10152338 8
Deletion Chr12 11715414 11715569 155
Deletion Chr12 14722314 14722318 4
Deletion Chr4 16673046 16673048 2
Deletion Chr3 18686001 18758000 71999 3
Deletion Chr4 19980351 19980353 2
Deletion Chr4 22981010 22981050 40
Deletion Chr5 24506178 24506200 22
Deletion Chr3 28540859 28540878 19
Deletion Chr2 28641860 28641870 10

Insertions: 7

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 39122691 39122693 1
Insertion Chr2 2142010 2142013 2
Insertion Chr2 10266413 10266417 3
Insertion Chr2 17647287 17647291 3
Insertion Chr3 10257340 10257345 4
Insertion Chr10 1060363 1060366 2
Insertion Chr6 14772101 14772168 66

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 18686538 18847577
Inversion Chr3 18755603 18847608
Inversion Chr1 39057109 39644382 OsKitaake01g419000
Inversion Chr1 39057118 39644400 OsKitaake01g419000

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	697854	C-T	Hetero	INTERGENIC
SBS	Chr1	697855	G-T	Hetero	INTERGENIC
SBS	Chr1	3587402	A-T	Hetero	INTERGENIC
SBS	Chr1	18380936	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g184500
SBS	Chr1	18427081	T-A	Hetero	STOP_GAINED	OsKitaake01g185000
SBS	Chr1	40595323	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr1	40595325	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g441000
SBS	Chr2	13700775	G-A	Hetero	INTERGENIC
SBS	Chr3	26484847	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	28840824	C-T	Homo	INTERGENIC
SBS	Chr4	7571559	G-A	Hetero	INTERGENIC
SBS	Chr4	9165725	C-T	Homo	INTERGENIC
SBS	Chr4	19433765	G-A	Hetero	INTERGENIC
SBS	Chr5	4389573	G-A	Hetero	INTERGENIC
SBS	Chr5	8362089	C-A	Hetero	INTERGENIC
SBS	Chr5	8524516	T-A	Homo	INTERGENIC
SBS	Chr5	17012322	G-T	Homo	INTRON
SBS	Chr6	13382748	T-A	Hetero	INTERGENIC
SBS	Chr6	18280969	A-G	Hetero	INTERGENIC
SBS	Chr6	22284224	G-A	Hetero	INTERGENIC
SBS	Chr7	10541520	C-A	Hetero	INTERGENIC
SBS	Chr7	27235034	G-A	Homo	INTERGENIC
SBS	Chr8	2316900	C-T	Hetero	INTERGENIC
SBS	Chr8	2485768	G-T	Hetero	INTERGENIC
SBS	Chr8	6004424	A-G	Hetero	INTERGENIC
SBS	Chr8	10914278	G-A	Hetero	INTERGENIC
SBS	Chr8	17195283	T-A	Hetero	INTERGENIC
SBS	Chr8	20476519	G-A	Homo	INTERGENIC
SBS	Chr8	24341683	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g187900
SBS	Chr9	5890195	G-A	Homo	INTERGENIC
SBS	Chr10	11277136	G-A	Homo	INTERGENIC
SBS	Chr10	12366972	A-T	Hetero	INTERGENIC
SBS	Chr11	2695559	T-G	Hetero	INTERGENIC
SBS	Chr12	9440686	C-A	Hetero	INTERGENIC
SBS	Chr12	26686750	A-C	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	3755535	3755536	1
Deletion	Chr6	3836988	3836994	6
Deletion	Chr2	3916001	3944000	27999	7
Deletion	Chr2	4182327	4182331	4
Deletion	Chr6	10152330	10152338	8
Deletion	Chr12	11715414	11715569	155
Deletion	Chr12	14722314	14722318	4
Deletion	Chr4	16673046	16673048	2
Deletion	Chr3	18686001	18758000	71999	3
Deletion	Chr4	19980351	19980353	2
Deletion	Chr4	22981010	22981050	40
Deletion	Chr5	24506178	24506200	22
Deletion	Chr3	28540859	28540878	19
Deletion	Chr2	28641860	28641870	10

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	18686538	18847577
Inversion	Chr3	18755603	18847608
Inversion	Chr1	39057109	39644382	OsKitaake01g419000
Inversion	Chr1	39057118	39644400	OsKitaake01g419000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes