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Mutant Information

Mutant Name	FN3697-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3697-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 35

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 21616904 C-A Homo INTERGENIC
SBS Chr1 29322988 G-C Hetero UTR_5_PRIME
SBS Chr1 33058498 T-C Hetero UTR_3_PRIME
SBS Chr3 17945486 C-T Homo INTERGENIC
SBS Chr3 19411623 G-A Hetero INTERGENIC
SBS Chr3 36828262 C-T Hetero INTERGENIC
SBS Chr4 27051427 A-G Hetero INTERGENIC
SBS Chr4 28087754 A-G Hetero INTERGENIC
SBS Chr4 32662737 G-T Hetero INTERGENIC
SBS Chr5 18871884 G-A Hetero INTERGENIC
SBS Chr6 7076680 T-G Homo INTERGENIC
SBS Chr6 15893316 C-A Hetero INTERGENIC
SBS Chr6 19438916 T-A Hetero INTRON
SBS Chr6 20430571 C-T Hetero INTERGENIC
SBS Chr7 10529822 C-T Hetero INTERGENIC
SBS Chr7 11084323 A-T Hetero INTERGENIC
SBS Chr7 14579440 T-C Hetero INTERGENIC
SBS Chr7 19329738 T-A Hetero INTERGENIC
SBS Chr7 29240803 T-A Homo INTRON
SBS Chr8 8042014 A-T Hetero INTERGENIC
SBS Chr8 10446671 C-T Hetero INTERGENIC
SBS Chr8 15808741 G-A Hetero INTERGENIC
SBS Chr8 18157465 G-A Hetero INTERGENIC
SBS Chr9 1820494 A-G Homo INTERGENIC
SBS Chr9 8337848 C-G Hetero INTERGENIC
SBS Chr10 251179 C-G Hetero INTERGENIC
SBS Chr10 7448911 C-A Homo INTERGENIC
SBS Chr11 821323 G-A Hetero INTERGENIC
SBS Chr11 7076595 A-T Homo INTERGENIC
SBS Chr11 11357849 G-C Homo INTERGENIC
SBS Chr11 23890013 T-C Hetero INTRON
SBS Chr12 4654898 A-G Hetero INTERGENIC
SBS Chr12 6845431 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake12g077800
SBS Chr12 19301270 C-T Hetero UTR_5_PRIME
SBS Chr12 26031505 T-C Hetero INTERGENIC

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 1294026 1294033 7
Deletion Chr9 4802342 4802343 1
Deletion Chr8 6269346 6269354 8
Deletion Chr2 6587638 6587649 11
Deletion Chr1 8939645 8939646 1
Deletion Chr11 16858025 16858026 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 12131658 12131662 3

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 895498 1072145
Inversion Chr11 895520 1072154

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	21616904	C-A	Homo	INTERGENIC
SBS	Chr1	29322988	G-C	Hetero	UTR_5_PRIME
SBS	Chr1	33058498	T-C	Hetero	UTR_3_PRIME
SBS	Chr3	17945486	C-T	Homo	INTERGENIC
SBS	Chr3	19411623	G-A	Hetero	INTERGENIC
SBS	Chr3	36828262	C-T	Hetero	INTERGENIC
SBS	Chr4	27051427	A-G	Hetero	INTERGENIC
SBS	Chr4	28087754	A-G	Hetero	INTERGENIC
SBS	Chr4	32662737	G-T	Hetero	INTERGENIC
SBS	Chr5	18871884	G-A	Hetero	INTERGENIC
SBS	Chr6	7076680	T-G	Homo	INTERGENIC
SBS	Chr6	15893316	C-A	Hetero	INTERGENIC
SBS	Chr6	19438916	T-A	Hetero	INTRON
SBS	Chr6	20430571	C-T	Hetero	INTERGENIC
SBS	Chr7	10529822	C-T	Hetero	INTERGENIC
SBS	Chr7	11084323	A-T	Hetero	INTERGENIC
SBS	Chr7	14579440	T-C	Hetero	INTERGENIC
SBS	Chr7	19329738	T-A	Hetero	INTERGENIC
SBS	Chr7	29240803	T-A	Homo	INTRON
SBS	Chr8	8042014	A-T	Hetero	INTERGENIC
SBS	Chr8	10446671	C-T	Hetero	INTERGENIC
SBS	Chr8	15808741	G-A	Hetero	INTERGENIC
SBS	Chr8	18157465	G-A	Hetero	INTERGENIC
SBS	Chr9	1820494	A-G	Homo	INTERGENIC
SBS	Chr9	8337848	C-G	Hetero	INTERGENIC
SBS	Chr10	251179	C-G	Hetero	INTERGENIC
SBS	Chr10	7448911	C-A	Homo	INTERGENIC
SBS	Chr11	821323	G-A	Hetero	INTERGENIC
SBS	Chr11	7076595	A-T	Homo	INTERGENIC
SBS	Chr11	11357849	G-C	Homo	INTERGENIC
SBS	Chr11	23890013	T-C	Hetero	INTRON
SBS	Chr12	4654898	A-G	Hetero	INTERGENIC
SBS	Chr12	6845431	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g077800
SBS	Chr12	19301270	C-T	Hetero	UTR_5_PRIME
SBS	Chr12	26031505	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	1294026	1294033	7
Deletion	Chr9	4802342	4802343	1
Deletion	Chr8	6269346	6269354	8
Deletion	Chr2	6587638	6587649	11
Deletion	Chr1	8939645	8939646	1
Deletion	Chr11	16858025	16858026	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	895498	1072145
Inversion	Chr11	895520	1072154

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes