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Mutant Information

Mutant Name	FN3698-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3698-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 85

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 11654102 C-A Hetero INTERGENIC
SBS Chr1 14835703 G-A Hetero INTERGENIC
SBS Chr1 16426387 G-T Hetero INTERGENIC
SBS Chr1 22719653 A-G Hetero INTRON
SBS Chr1 30891307 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g307000
SBS Chr1 40194404 T-C Hetero INTERGENIC
SBS Chr2 1614839 G-T Hetero INTERGENIC
SBS Chr2 10807742 G-C Hetero SYNONYMOUS_CODING
SBS Chr2 11816351 G-C Hetero INTRON
SBS Chr2 21107221 A-G Hetero INTERGENIC
SBS Chr2 23949014 C-T Hetero INTERGENIC
SBS Chr2 25344273 T-C Hetero INTERGENIC
SBS Chr2 29147636 G-A Hetero INTERGENIC
SBS Chr2 30161600 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g306500
SBS Chr2 35788732 A-T Homo INTERGENIC
SBS Chr2 36126404 C-A Hetero INTRON
SBS Chr3 2339797 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 10952822 A-G Hetero INTRON
SBS Chr3 13320804 G-A Homo INTERGENIC
SBS Chr3 33367627 G-T Homo SPLICE_SITE_REGION
SBS Chr3 35820938 G-T Hetero INTERGENIC
SBS Chr3 36180692 G-T Hetero INTERGENIC
SBS Chr4 693023 A-G Homo INTERGENIC
SBS Chr4 2129422 G-A Homo INTERGENIC
SBS Chr4 2904598 G-A Homo INTERGENIC
SBS Chr4 4020817 C-T Hetero INTERGENIC
SBS Chr4 4307519 G-A Hetero INTERGENIC
SBS Chr4 7518381 C-T Hetero INTERGENIC
SBS Chr4 7964998 G-A Homo INTERGENIC
SBS Chr4 20697951 G-A Hetero INTRON
SBS Chr4 26870201 G-T Hetero INTERGENIC
SBS Chr4 31869302 G-A Hetero UTR_3_PRIME
SBS Chr4 36617083 G-T Hetero INTERGENIC
SBS Chr5 2419222 G-A Hetero INTERGENIC
SBS Chr5 6969555 C-A Homo INTERGENIC
SBS Chr5 7816281 C-T Hetero INTERGENIC
SBS Chr5 9215807 T-A Hetero INTERGENIC
SBS Chr5 10255633 G-C Hetero INTERGENIC
SBS Chr5 11989036 G-T Hetero INTERGENIC
SBS Chr5 15339991 A-G Hetero INTERGENIC
SBS Chr5 15625067 G-A Hetero INTERGENIC
SBS Chr5 21354561 C-A Hetero INTERGENIC
SBS Chr5 21354577 G-A Hetero INTERGENIC
SBS Chr5 26349545 T-C Hetero UTR_3_PRIME
SBS Chr6 1319067 G-C Hetero INTERGENIC
SBS Chr6 2656015 T-G Hetero INTERGENIC
SBS Chr6 7119591 A-T Hetero INTERGENIC
SBS Chr6 8636045 G-A Hetero INTERGENIC
SBS Chr6 12842120 C-T Hetero INTERGENIC
SBS Chr6 15691695 G-A Hetero INTERGENIC
SBS Chr6 19638807 T-A Hetero INTERGENIC
SBS Chr6 27398603 G-A Hetero INTERGENIC
SBS Chr7 34370 T-C Hetero INTERGENIC
SBS Chr7 2621221 C-T Hetero INTRON
SBS Chr7 7321220 A-T Hetero INTERGENIC
SBS Chr7 17650827 C-T Hetero INTERGENIC
SBS Chr7 18088784 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g145500
SBS Chr7 18088785 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake07g145500
SBS Chr7 22427169 C-T Hetero INTERGENIC
SBS Chr8 15459862 G-T Hetero INTERGENIC
SBS Chr9 314639 T-C Hetero INTERGENIC
SBS Chr9 1369240 G-A Homo INTERGENIC
SBS Chr9 2731063 T-C Hetero INTERGENIC
SBS Chr9 5796993 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake09g033400
SBS Chr9 6412634 A-G Hetero INTERGENIC
SBS Chr9 6757624 T-C Homo INTERGENIC
SBS Chr9 9650248 C-T Homo NON_SYNONYMOUS_CODING OsKitaake09g058800
SBS Chr10 5289873 G-A Hetero INTERGENIC
SBS Chr10 8337198 C-T Hetero INTERGENIC
SBS Chr10 9607267 A-G Hetero SPLICE_SITE_REGION
SBS Chr10 11218323 G-T Hetero INTERGENIC
SBS Chr10 11305459 G-C Hetero INTRON
SBS Chr10 12941568 G-A Homo INTERGENIC
SBS Chr10 13760863 C-T Hetero SYNONYMOUS_CODING
SBS Chr10 17872468 T-C Hetero INTERGENIC
SBS Chr10 19261627 G-C Hetero INTERGENIC
SBS Chr10 20906820 C-T Homo INTERGENIC
SBS Chr11 2884127 C-A Hetero INTRON
SBS Chr11 3558522 G-A Hetero INTRON
SBS Chr11 11052221 T-C Hetero INTERGENIC
SBS Chr12 2055475 G-A Hetero INTERGENIC
SBS Chr12 9533720 G-A Homo INTERGENIC
SBS Chr12 10839178 A-G Homo INTRON
SBS Chr12 15011085 A-G Hetero INTERGENIC
SBS Chr12 26671264 G-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1221933 1221939 6
Deletion Chr9 4184914 4184920 6
Deletion Chr1 8610542 8610544 2
Deletion Chr12 10886001 10978000 91999 3
Deletion Chr9 11345215 11345218 3
Deletion Chr1 11358843 11358844 1
Deletion Chr9 11391001 11416000 24999 2
Deletion Chr1 12881668 12881675 7 OsKitaake01g153900
Deletion Chr4 16030333 16030335 2 OsKitaake04g075700
Deletion Chr11 16194008 16194029 21
Deletion Chr7 17390115 17390116 1
Deletion Chr7 20954461 20954462 1 OsKitaake07g173000
Deletion Chr11 21247711 21247716 5
Deletion Chr11 23535333 23535335 2
Deletion Chr1 28352535 28352537 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 9643192 9643195 2
Insertion Chr6 416961 416964 2
Insertion Chr6 8023816 8023819 2
Insertion Chr12 20547491 20547494 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr5 6216464 6300351 OsKitaake05g064900
Inversion Chr5 6216473 6300353 OsKitaake05g064900
Inversion Chr9 8864243 9474745
Inversion Chr9 9474752 9477248

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 10884630 Chr8 21392031 OsKitaake08g160700
Translocation Chr12 10885878 Chr8 21392038 OsKitaake08g160700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	11654102	C-A	Hetero	INTERGENIC
SBS	Chr1	14835703	G-A	Hetero	INTERGENIC
SBS	Chr1	16426387	G-T	Hetero	INTERGENIC
SBS	Chr1	22719653	A-G	Hetero	INTRON
SBS	Chr1	30891307	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g307000
SBS	Chr1	40194404	T-C	Hetero	INTERGENIC
SBS	Chr2	1614839	G-T	Hetero	INTERGENIC
SBS	Chr2	10807742	G-C	Hetero	SYNONYMOUS_CODING
SBS	Chr2	11816351	G-C	Hetero	INTRON
SBS	Chr2	21107221	A-G	Hetero	INTERGENIC
SBS	Chr2	23949014	C-T	Hetero	INTERGENIC
SBS	Chr2	25344273	T-C	Hetero	INTERGENIC
SBS	Chr2	29147636	G-A	Hetero	INTERGENIC
SBS	Chr2	30161600	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g306500
SBS	Chr2	35788732	A-T	Homo	INTERGENIC
SBS	Chr2	36126404	C-A	Hetero	INTRON
SBS	Chr3	2339797	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	10952822	A-G	Hetero	INTRON
SBS	Chr3	13320804	G-A	Homo	INTERGENIC
SBS	Chr3	33367627	G-T	Homo	SPLICE_SITE_REGION
SBS	Chr3	35820938	G-T	Hetero	INTERGENIC
SBS	Chr3	36180692	G-T	Hetero	INTERGENIC
SBS	Chr4	693023	A-G	Homo	INTERGENIC
SBS	Chr4	2129422	G-A	Homo	INTERGENIC
SBS	Chr4	2904598	G-A	Homo	INTERGENIC
SBS	Chr4	4020817	C-T	Hetero	INTERGENIC
SBS	Chr4	4307519	G-A	Hetero	INTERGENIC
SBS	Chr4	7518381	C-T	Hetero	INTERGENIC
SBS	Chr4	7964998	G-A	Homo	INTERGENIC
SBS	Chr4	20697951	G-A	Hetero	INTRON
SBS	Chr4	26870201	G-T	Hetero	INTERGENIC
SBS	Chr4	31869302	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	36617083	G-T	Hetero	INTERGENIC
SBS	Chr5	2419222	G-A	Hetero	INTERGENIC
SBS	Chr5	6969555	C-A	Homo	INTERGENIC
SBS	Chr5	7816281	C-T	Hetero	INTERGENIC
SBS	Chr5	9215807	T-A	Hetero	INTERGENIC
SBS	Chr5	10255633	G-C	Hetero	INTERGENIC
SBS	Chr5	11989036	G-T	Hetero	INTERGENIC
SBS	Chr5	15339991	A-G	Hetero	INTERGENIC
SBS	Chr5	15625067	G-A	Hetero	INTERGENIC
SBS	Chr5	21354561	C-A	Hetero	INTERGENIC
SBS	Chr5	21354577	G-A	Hetero	INTERGENIC
SBS	Chr5	26349545	T-C	Hetero	UTR_3_PRIME
SBS	Chr6	1319067	G-C	Hetero	INTERGENIC
SBS	Chr6	2656015	T-G	Hetero	INTERGENIC
SBS	Chr6	7119591	A-T	Hetero	INTERGENIC
SBS	Chr6	8636045	G-A	Hetero	INTERGENIC
SBS	Chr6	12842120	C-T	Hetero	INTERGENIC
SBS	Chr6	15691695	G-A	Hetero	INTERGENIC
SBS	Chr6	19638807	T-A	Hetero	INTERGENIC
SBS	Chr6	27398603	G-A	Hetero	INTERGENIC
SBS	Chr7	34370	T-C	Hetero	INTERGENIC
SBS	Chr7	2621221	C-T	Hetero	INTRON
SBS	Chr7	7321220	A-T	Hetero	INTERGENIC
SBS	Chr7	17650827	C-T	Hetero	INTERGENIC
SBS	Chr7	18088784	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g145500
SBS	Chr7	18088785	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g145500
SBS	Chr7	22427169	C-T	Hetero	INTERGENIC
SBS	Chr8	15459862	G-T	Hetero	INTERGENIC
SBS	Chr9	314639	T-C	Hetero	INTERGENIC
SBS	Chr9	1369240	G-A	Homo	INTERGENIC
SBS	Chr9	2731063	T-C	Hetero	INTERGENIC
SBS	Chr9	5796993	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake09g033400
SBS	Chr9	6412634	A-G	Hetero	INTERGENIC
SBS	Chr9	6757624	T-C	Homo	INTERGENIC
SBS	Chr9	9650248	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g058800
SBS	Chr10	5289873	G-A	Hetero	INTERGENIC
SBS	Chr10	8337198	C-T	Hetero	INTERGENIC
SBS	Chr10	9607267	A-G	Hetero	SPLICE_SITE_REGION
SBS	Chr10	11218323	G-T	Hetero	INTERGENIC
SBS	Chr10	11305459	G-C	Hetero	INTRON
SBS	Chr10	12941568	G-A	Homo	INTERGENIC
SBS	Chr10	13760863	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr10	17872468	T-C	Hetero	INTERGENIC
SBS	Chr10	19261627	G-C	Hetero	INTERGENIC
SBS	Chr10	20906820	C-T	Homo	INTERGENIC
SBS	Chr11	2884127	C-A	Hetero	INTRON
SBS	Chr11	3558522	G-A	Hetero	INTRON
SBS	Chr11	11052221	T-C	Hetero	INTERGENIC
SBS	Chr12	2055475	G-A	Hetero	INTERGENIC
SBS	Chr12	9533720	G-A	Homo	INTERGENIC
SBS	Chr12	10839178	A-G	Homo	INTRON
SBS	Chr12	15011085	A-G	Hetero	INTERGENIC
SBS	Chr12	26671264	G-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1221933	1221939	6
Deletion	Chr9	4184914	4184920	6
Deletion	Chr1	8610542	8610544	2
Deletion	Chr12	10886001	10978000	91999	3
Deletion	Chr9	11345215	11345218	3
Deletion	Chr1	11358843	11358844	1
Deletion	Chr9	11391001	11416000	24999	2
Deletion	Chr1	12881668	12881675	7	OsKitaake01g153900
Deletion	Chr4	16030333	16030335	2	OsKitaake04g075700
Deletion	Chr11	16194008	16194029	21
Deletion	Chr7	17390115	17390116	1
Deletion	Chr7	20954461	20954462	1	OsKitaake07g173000
Deletion	Chr11	21247711	21247716	5
Deletion	Chr11	23535333	23535335	2
Deletion	Chr1	28352535	28352537	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr5	6216464	6300351	OsKitaake05g064900
Inversion	Chr5	6216473	6300353	OsKitaake05g064900
Inversion	Chr9	8864243	9474745
Inversion	Chr9	9474752	9477248

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes