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Mutant Information

Mutant Name	FN3699-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3699-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 39

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12001231 G-A Homo INTERGENIC
SBS Chr1 12695932 G-A Homo INTRON
SBS Chr1 18943317 T-C Homo INTRON
SBS Chr1 21966438 C-G Homo INTRON
SBS Chr2 13739034 A-C Homo INTRON
SBS Chr2 16287896 G-C Hetero INTERGENIC
SBS Chr2 17933073 C-T Hetero INTERGENIC
SBS Chr2 31932846 T-C Hetero UTR_3_PRIME
SBS Chr2 35013211 A-T Hetero UTR_5_PRIME
SBS Chr3 1798699 G-T Homo INTERGENIC
SBS Chr3 8975303 G-A Hetero INTERGENIC
SBS Chr3 23263698 T-A Hetero UTR_3_PRIME
SBS Chr3 23263699 G-A Hetero UTR_3_PRIME
SBS Chr3 28923275 C-T Hetero INTRON
SBS Chr4 2764840 G-T Hetero INTERGENIC
SBS Chr4 5255615 G-T Hetero INTERGENIC
SBS Chr4 7741498 A-C Hetero INTRON
SBS Chr4 7749488 T-A Hetero INTERGENIC
SBS Chr4 8623211 T-G Hetero INTERGENIC
SBS Chr4 14197280 G-A Hetero INTERGENIC
SBS Chr4 14197281 G-A Hetero INTERGENIC
SBS Chr4 16422617 G-A Hetero INTERGENIC
SBS Chr4 16422618 G-A Hetero INTERGENIC
SBS Chr4 20185921 A-G Hetero INTERGENIC
SBS Chr7 10635810 G-C Homo INTERGENIC
SBS Chr7 12158142 G-A Hetero INTERGENIC
SBS Chr7 23862386 G-A Hetero INTRON
SBS Chr8 109048 T-G Homo UTR_3_PRIME
SBS Chr8 3498766 C-T Homo INTERGENIC
SBS Chr9 5531604 C-A Hetero INTERGENIC
SBS Chr10 9342693 G-A Hetero INTERGENIC
SBS Chr10 14302857 C-A Homo INTERGENIC
SBS Chr11 9738430 A-G Hetero INTRON
SBS Chr11 19631707 A-G Hetero INTERGENIC
SBS Chr11 23064969 A-T Hetero INTERGENIC
SBS Chr12 5117267 A-G Homo INTERGENIC
SBS Chr12 6397101 A-G Homo INTERGENIC
SBS Chr12 6397110 C-T Homo INTERGENIC
SBS Chr12 11768558 A-T Homo INTERGENIC

Deletions: 24

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 485972 485975 3
Deletion Chr6 991770 991772 2
Deletion Chr10 2054108 2054130 22
Deletion Chr1 6263685 6263687 2
Deletion Chr12 6588224 6588250 26
Deletion Chr11 7053123 7053131 8
Deletion Chr3 7847003 7847010 7
Deletion Chr3 10633635 10633637 2
Deletion Chr2 11702589 11702590 1
Deletion Chr4 12317336 12317339 3
Deletion Chr10 12339644 12339645 1
Deletion Chr8 12590848 12590857 9
Deletion Chr12 19360001 19444000 83999 6
Deletion Chr10 19397516 19397548 32
Deletion Chr10 19674871 19674873 2
Deletion Chr6 20076327 20076328 1
Deletion Chr4 20222001 20281000 58999 7
Deletion Chr8 20440693 20440694 1
Deletion Chr1 26134148 26134155 7
Deletion Chr8 28780784 28780785 1
Deletion Chr6 29918313 29918320 7
Deletion Chr4 30810632 30810634 2
Deletion Chr3 34958184 34958185 1
Deletion Chr1 38074447 38074448 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr11 14619329 14619333 3

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 6022093 6619815 OsKitaake12g075900
Inversion Chr12 6399377 6584539
Inversion Chr12 6399405 6584544
Inversion Chr11 28822222 28949543 OsKitaake11g236700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12001231	G-A	Homo	INTERGENIC
SBS	Chr1	12695932	G-A	Homo	INTRON
SBS	Chr1	18943317	T-C	Homo	INTRON
SBS	Chr1	21966438	C-G	Homo	INTRON
SBS	Chr2	13739034	A-C	Homo	INTRON
SBS	Chr2	16287896	G-C	Hetero	INTERGENIC
SBS	Chr2	17933073	C-T	Hetero	INTERGENIC
SBS	Chr2	31932846	T-C	Hetero	UTR_3_PRIME
SBS	Chr2	35013211	A-T	Hetero	UTR_5_PRIME
SBS	Chr3	1798699	G-T	Homo	INTERGENIC
SBS	Chr3	8975303	G-A	Hetero	INTERGENIC
SBS	Chr3	23263698	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	23263699	G-A	Hetero	UTR_3_PRIME
SBS	Chr3	28923275	C-T	Hetero	INTRON
SBS	Chr4	2764840	G-T	Hetero	INTERGENIC
SBS	Chr4	5255615	G-T	Hetero	INTERGENIC
SBS	Chr4	7741498	A-C	Hetero	INTRON
SBS	Chr4	7749488	T-A	Hetero	INTERGENIC
SBS	Chr4	8623211	T-G	Hetero	INTERGENIC
SBS	Chr4	14197280	G-A	Hetero	INTERGENIC
SBS	Chr4	14197281	G-A	Hetero	INTERGENIC
SBS	Chr4	16422617	G-A	Hetero	INTERGENIC
SBS	Chr4	16422618	G-A	Hetero	INTERGENIC
SBS	Chr4	20185921	A-G	Hetero	INTERGENIC
SBS	Chr7	10635810	G-C	Homo	INTERGENIC
SBS	Chr7	12158142	G-A	Hetero	INTERGENIC
SBS	Chr7	23862386	G-A	Hetero	INTRON
SBS	Chr8	109048	T-G	Homo	UTR_3_PRIME
SBS	Chr8	3498766	C-T	Homo	INTERGENIC
SBS	Chr9	5531604	C-A	Hetero	INTERGENIC
SBS	Chr10	9342693	G-A	Hetero	INTERGENIC
SBS	Chr10	14302857	C-A	Homo	INTERGENIC
SBS	Chr11	9738430	A-G	Hetero	INTRON
SBS	Chr11	19631707	A-G	Hetero	INTERGENIC
SBS	Chr11	23064969	A-T	Hetero	INTERGENIC
SBS	Chr12	5117267	A-G	Homo	INTERGENIC
SBS	Chr12	6397101	A-G	Homo	INTERGENIC
SBS	Chr12	6397110	C-T	Homo	INTERGENIC
SBS	Chr12	11768558	A-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	485972	485975	3
Deletion	Chr6	991770	991772	2
Deletion	Chr10	2054108	2054130	22
Deletion	Chr1	6263685	6263687	2
Deletion	Chr12	6588224	6588250	26
Deletion	Chr11	7053123	7053131	8
Deletion	Chr3	7847003	7847010	7
Deletion	Chr3	10633635	10633637	2
Deletion	Chr2	11702589	11702590	1
Deletion	Chr4	12317336	12317339	3
Deletion	Chr10	12339644	12339645	1
Deletion	Chr8	12590848	12590857	9
Deletion	Chr12	19360001	19444000	83999	6
Deletion	Chr10	19397516	19397548	32
Deletion	Chr10	19674871	19674873	2
Deletion	Chr6	20076327	20076328	1
Deletion	Chr4	20222001	20281000	58999	7
Deletion	Chr8	20440693	20440694	1
Deletion	Chr1	26134148	26134155	7
Deletion	Chr8	28780784	28780785	1
Deletion	Chr6	29918313	29918320	7
Deletion	Chr4	30810632	30810634	2
Deletion	Chr3	34958184	34958185	1
Deletion	Chr1	38074447	38074448	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	6022093	6619815	OsKitaake12g075900
Inversion	Chr12	6399377	6584539
Inversion	Chr12	6399405	6584544
Inversion	Chr11	28822222	28949543	OsKitaake11g236700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes