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Mutant Information

Mutant Name	FN3700-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3700-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 31

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 12453783 C-T Hetero INTERGENIC
SBS Chr1 18955770 A-G Hetero INTRON
SBS Chr1 20919909 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g204800
SBS Chr1 20919910 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g204800
SBS Chr1 34236111 C-T Hetero INTERGENIC
SBS Chr2 12392717 G-A Hetero SYNONYMOUS_CODING
SBS Chr2 15214241 A-G Hetero INTERGENIC
SBS Chr2 15783142 T-C Hetero INTRON
SBS Chr2 15888581 T-C Hetero INTERGENIC
SBS Chr3 8013889 C-A Hetero UTR_3_PRIME
SBS Chr3 15953295 C-T Hetero UTR_5_PRIME
SBS Chr3 16531818 A-T Hetero INTERGENIC
SBS Chr3 18234132 A-T Hetero INTERGENIC
SBS Chr3 26613902 G-A Hetero INTERGENIC
SBS Chr4 34738401 C-A Hetero INTERGENIC
SBS Chr4 34738402 T-A Hetero INTERGENIC
SBS Chr5 7644239 G-T Hetero INTERGENIC
SBS Chr5 26544845 G-T Hetero NON_SYNONYMOUS_CODING OsKitaake05g236000
SBS Chr6 245456 T-C Hetero INTERGENIC
SBS Chr6 24605348 G-A Hetero INTERGENIC
SBS Chr8 24699543 A-T Hetero INTERGENIC
SBS Chr8 27353461 G-A Hetero INTERGENIC
SBS Chr9 1173324 A-C Homo NON_SYNONYMOUS_CODING OsKitaake09g007000
SBS Chr9 21490182 C-T Homo UTR_3_PRIME
SBS Chr10 8393379 C-T Hetero INTERGENIC
SBS Chr10 16621328 C-T Hetero INTERGENIC
SBS Chr10 19540944 G-A Hetero INTERGENIC
SBS Chr10 21621844 A-T Hetero INTERGENIC
SBS Chr11 17530532 T-C Homo INTERGENIC
SBS Chr12 10447606 A-T Hetero INTERGENIC
SBS Chr12 16241915 A-G Hetero INTERGENIC

Deletions: 30

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 2103752 2103762 10
Deletion Chr9 2305160 2305164 4
Deletion Chr12 3265998 3266000 2
Deletion Chr11 5948001 5971000 22999 2
Deletion Chr6 6798413 6798417 4
Deletion Chr11 6828512 6828513 1
Deletion Chr8 7171086 7171088 2
Deletion Chr12 7202790 7202807 17
Deletion Chr6 9529361 9529362 1
Deletion Chr8 11454007 11454014 7
Deletion Chr2 11631965 11631966 1
Deletion Chr11 13363253 13363258 5
Deletion Chr5 14041568 14041569 1
Deletion Chr11 14798138 14798142 4
Deletion Chr2 16923842 16923847 5
Deletion Chr6 17048511 17048512 1
Deletion Chr8 17504762 17504763 1
Deletion Chr9 18076660 18076665 5
Deletion Chr9 18532373 18532374 1
Deletion Chr3 19754763 19754770 7
Deletion Chr9 20983092 20983094 2
Deletion Chr1 21029985 21029987 2
Deletion Chr9 21657723 21657729 6 OsKitaake09g190400
Deletion Chr12 22183460 22183462 2
Deletion Chr11 28474047 28474057 10
Deletion Chr6 29596641 29596654 13
Deletion Chr3 32759523 32759535 12 OsKitaake03g347800
Deletion Chr1 33104251 33104264 13
Deletion Chr3 33701215 33701220 5
Deletion Chr1 34005376 34005378 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 5722280 5722288 7
Insertion Chr4 5141364 5141366 1
Insertion Chr8 15413290 15413292 1
Insertion Chr11 9321947 9321949 1

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	12453783	C-T	Hetero	INTERGENIC
SBS	Chr1	18955770	A-G	Hetero	INTRON
SBS	Chr1	20919909	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g204800
SBS	Chr1	20919910	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g204800
SBS	Chr1	34236111	C-T	Hetero	INTERGENIC
SBS	Chr2	12392717	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr2	15214241	A-G	Hetero	INTERGENIC
SBS	Chr2	15783142	T-C	Hetero	INTRON
SBS	Chr2	15888581	T-C	Hetero	INTERGENIC
SBS	Chr3	8013889	C-A	Hetero	UTR_3_PRIME
SBS	Chr3	15953295	C-T	Hetero	UTR_5_PRIME
SBS	Chr3	16531818	A-T	Hetero	INTERGENIC
SBS	Chr3	18234132	A-T	Hetero	INTERGENIC
SBS	Chr3	26613902	G-A	Hetero	INTERGENIC
SBS	Chr4	34738401	C-A	Hetero	INTERGENIC
SBS	Chr4	34738402	T-A	Hetero	INTERGENIC
SBS	Chr5	7644239	G-T	Hetero	INTERGENIC
SBS	Chr5	26544845	G-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g236000
SBS	Chr6	245456	T-C	Hetero	INTERGENIC
SBS	Chr6	24605348	G-A	Hetero	INTERGENIC
SBS	Chr8	24699543	A-T	Hetero	INTERGENIC
SBS	Chr8	27353461	G-A	Hetero	INTERGENIC
SBS	Chr9	1173324	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake09g007000
SBS	Chr9	21490182	C-T	Homo	UTR_3_PRIME
SBS	Chr10	8393379	C-T	Hetero	INTERGENIC
SBS	Chr10	16621328	C-T	Hetero	INTERGENIC
SBS	Chr10	19540944	G-A	Hetero	INTERGENIC
SBS	Chr10	21621844	A-T	Hetero	INTERGENIC
SBS	Chr11	17530532	T-C	Homo	INTERGENIC
SBS	Chr12	10447606	A-T	Hetero	INTERGENIC
SBS	Chr12	16241915	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	2103752	2103762	10
Deletion	Chr9	2305160	2305164	4
Deletion	Chr12	3265998	3266000	2
Deletion	Chr11	5948001	5971000	22999	2
Deletion	Chr6	6798413	6798417	4
Deletion	Chr11	6828512	6828513	1
Deletion	Chr8	7171086	7171088	2
Deletion	Chr12	7202790	7202807	17
Deletion	Chr6	9529361	9529362	1
Deletion	Chr8	11454007	11454014	7
Deletion	Chr2	11631965	11631966	1
Deletion	Chr11	13363253	13363258	5
Deletion	Chr5	14041568	14041569	1
Deletion	Chr11	14798138	14798142	4
Deletion	Chr2	16923842	16923847	5
Deletion	Chr6	17048511	17048512	1
Deletion	Chr8	17504762	17504763	1
Deletion	Chr9	18076660	18076665	5
Deletion	Chr9	18532373	18532374	1
Deletion	Chr3	19754763	19754770	7
Deletion	Chr9	20983092	20983094	2
Deletion	Chr1	21029985	21029987	2
Deletion	Chr9	21657723	21657729	6	OsKitaake09g190400
Deletion	Chr12	22183460	22183462	2
Deletion	Chr11	28474047	28474057	10
Deletion	Chr6	29596641	29596654	13
Deletion	Chr3	32759523	32759535	12	OsKitaake03g347800
Deletion	Chr1	33104251	33104264	13
Deletion	Chr3	33701215	33701220	5
Deletion	Chr1	34005376	34005378	2

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes