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Mutant Information

Mutant Name	FN3701-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3701-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6500377 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g082100
SBS Chr1 16027822 C-G Hetero INTERGENIC
SBS Chr1 18910221 C-T Hetero INTERGENIC
SBS Chr1 25909247 T-C Hetero INTERGENIC
SBS Chr2 4950930 A-C Hetero INTERGENIC
SBS Chr2 5304474 C-T Hetero INTERGENIC
SBS Chr2 5417613 A-T Hetero UTR_5_PRIME
SBS Chr2 11741531 A-T Hetero INTERGENIC
SBS Chr2 12332249 G-T Hetero INTERGENIC
SBS Chr2 20025324 C-T Hetero INTERGENIC
SBS Chr2 26683643 C-T Homo INTERGENIC
SBS Chr2 29766137 G-A Homo INTRON
SBS Chr2 29766140 G-A Homo INTRON
SBS Chr3 460147 G-C Hetero INTERGENIC
SBS Chr3 34541007 T-A Homo INTERGENIC
SBS Chr4 2148812 A-G Hetero INTERGENIC
SBS Chr4 4127345 A-G Hetero INTERGENIC
SBS Chr4 24412414 G-A Hetero INTERGENIC
SBS Chr4 32220391 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 17817991 G-T Hetero INTERGENIC
SBS Chr5 30166877 T-A Homo INTERGENIC
SBS Chr6 14981010 G-A Hetero INTERGENIC
SBS Chr6 15735050 G-T Hetero INTERGENIC
SBS Chr6 15814692 G-A Homo INTERGENIC
SBS Chr6 18282844 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake06g167403
SBS Chr6 18906573 A-G Homo INTERGENIC
SBS Chr6 20285810 C-T Hetero INTERGENIC
SBS Chr6 20286033 A-G Hetero INTERGENIC
SBS Chr7 12980971 A-T Hetero INTERGENIC
SBS Chr7 19673880 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g160500
SBS Chr8 249459 G-A Hetero INTERGENIC
SBS Chr8 18191760 C-T Homo INTERGENIC
SBS Chr10 7220141 C-G Homo INTERGENIC
SBS Chr10 8453453 C-T Hetero INTERGENIC
SBS Chr10 8904886 A-G Hetero INTERGENIC
SBS Chr10 21767556 C-T Hetero INTERGENIC
SBS Chr12 14874724 T-C Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 2931621 2931623 2
Deletion Chr1 13956728 13956729 1
Deletion Chr10 16218492 16218501 9
Deletion Chr5 16782613 16782620 7
Deletion Chr9 17710436 17710443 7
Deletion Chr10 17933533 17933534 1
Deletion Chr9 19332178 19332179 1 OsKitaake09g156800
Deletion Chr12 22277430 22277433 3 OsKitaake12g175300
Deletion Chr11 22802315 22802317 2
Deletion Chr3 23094334 23094337 3
Deletion Chr3 36543688 36543692 4
Deletion Chr1 39430188 39430199 11

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr7 2768573 2768576 2
Insertion Chr5 6785620 6785623 2 OsKitaake05g068400

Inversions: 7

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 320069 623769 OsKitaake08g004500
Inversion Chr10 5692500 6016213
Inversion Chr10 5692505 6016215
Inversion Chr7 6347564 6953829
Inversion Chr7 6347586 6953838
Inversion Chr1 16423602 16579143
Inversion Chr1 16423606 16579147

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 237283 Chr1 43140462 OsKitaake01g476200
Translocation Chr5 237315 Chr1 43140467 OsKitaake01g476200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6500377	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g082100
SBS	Chr1	16027822	C-G	Hetero	INTERGENIC
SBS	Chr1	18910221	C-T	Hetero	INTERGENIC
SBS	Chr1	25909247	T-C	Hetero	INTERGENIC
SBS	Chr2	4950930	A-C	Hetero	INTERGENIC
SBS	Chr2	5304474	C-T	Hetero	INTERGENIC
SBS	Chr2	5417613	A-T	Hetero	UTR_5_PRIME
SBS	Chr2	11741531	A-T	Hetero	INTERGENIC
SBS	Chr2	12332249	G-T	Hetero	INTERGENIC
SBS	Chr2	20025324	C-T	Hetero	INTERGENIC
SBS	Chr2	26683643	C-T	Homo	INTERGENIC
SBS	Chr2	29766137	G-A	Homo	INTRON
SBS	Chr2	29766140	G-A	Homo	INTRON
SBS	Chr3	460147	G-C	Hetero	INTERGENIC
SBS	Chr3	34541007	T-A	Homo	INTERGENIC
SBS	Chr4	2148812	A-G	Hetero	INTERGENIC
SBS	Chr4	4127345	A-G	Hetero	INTERGENIC
SBS	Chr4	24412414	G-A	Hetero	INTERGENIC
SBS	Chr4	32220391	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	17817991	G-T	Hetero	INTERGENIC
SBS	Chr5	30166877	T-A	Homo	INTERGENIC
SBS	Chr6	14981010	G-A	Hetero	INTERGENIC
SBS	Chr6	15735050	G-T	Hetero	INTERGENIC
SBS	Chr6	15814692	G-A	Homo	INTERGENIC
SBS	Chr6	18282844	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g167403
SBS	Chr6	18906573	A-G	Homo	INTERGENIC
SBS	Chr6	20285810	C-T	Hetero	INTERGENIC
SBS	Chr6	20286033	A-G	Hetero	INTERGENIC
SBS	Chr7	12980971	A-T	Hetero	INTERGENIC
SBS	Chr7	19673880	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g160500
SBS	Chr8	249459	G-A	Hetero	INTERGENIC
SBS	Chr8	18191760	C-T	Homo	INTERGENIC
SBS	Chr10	7220141	C-G	Homo	INTERGENIC
SBS	Chr10	8453453	C-T	Hetero	INTERGENIC
SBS	Chr10	8904886	A-G	Hetero	INTERGENIC
SBS	Chr10	21767556	C-T	Hetero	INTERGENIC
SBS	Chr12	14874724	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	2931621	2931623	2
Deletion	Chr1	13956728	13956729	1
Deletion	Chr10	16218492	16218501	9
Deletion	Chr5	16782613	16782620	7
Deletion	Chr9	17710436	17710443	7
Deletion	Chr10	17933533	17933534	1
Deletion	Chr9	19332178	19332179	1	OsKitaake09g156800
Deletion	Chr12	22277430	22277433	3	OsKitaake12g175300
Deletion	Chr11	22802315	22802317	2
Deletion	Chr3	23094334	23094337	3
Deletion	Chr3	36543688	36543692	4
Deletion	Chr1	39430188	39430199	11

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	320069	623769	OsKitaake08g004500
Inversion	Chr10	5692500	6016213
Inversion	Chr10	5692505	6016215
Inversion	Chr7	6347564	6953829
Inversion	Chr7	6347586	6953838
Inversion	Chr1	16423602	16579143
Inversion	Chr1	16423606	16579147

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes