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| Mutant Information |
|---|
| Mutant Name | FN3705-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3705-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 31
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 5168191 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 6726104 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 15880243 | G-A | Homo | INTERGENIC | |
| SBS | Chr1 | 24935853 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 27945045 | T-A | Homo | INTERGENIC | |
| SBS | Chr1 | 38625127 | A-T | Homo | INTRON | |
| SBS | Chr2 | 2215685 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 4353293 | G-T | Homo | INTERGENIC | |
| SBS | Chr3 | 7306189 | C-T | Homo | INTRON | |
| SBS | Chr3 | 25709603 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 31305442 | C-T | Homo | INTRON | |
| SBS | Chr4 | 2198656 | C-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 9662297 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 25690985 | T-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 28155189 | C-T | Homo | INTERGENIC | |
| SBS | Chr4 | 30216095 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 2219375 | A-G | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 12814724 | G-A | Homo | INTERGENIC | |
| SBS | Chr6 | 22408745 | G-C | Hetero | INTERGENIC | |
| SBS | Chr7 | 8476191 | A-G | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 9429908 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 22588852 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 22898160 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 2273007 | A-G | Hetero | INTERGENIC | |
| SBS | Chr8 | 19421868 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 19421869 | G-T | Homo | INTERGENIC | |
| SBS | Chr8 | 25667308 | A-T | Homo | INTERGENIC | |
| SBS | Chr9 | 3907507 | C-T | Hetero | INTERGENIC | |
| SBS | Chr11 | 9639774 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 1510367 | C-T | Hetero | INTERGENIC | |
| SBS | Chr12 | 1510368 | C-T | Hetero | INTERGENIC |
Deletions: 11
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr12 | 12217199 | 12217200 | 1 | |
| Deletion | Chr6 | 13087001 | 13154000 | 66999 | 2 |
| Deletion | Chr12 | 14181911 | 14181912 | 1 | |
| Deletion | Chr11 | 14291080 | 14291082 | 2 | |
| Deletion | Chr7 | 14302105 | 14302109 | 4 | |
| Deletion | Chr11 | 14864621 | 14864622 | 1 | |
| Deletion | Chr11 | 22564001 | 22577000 | 12999 | 2 |
| Deletion | Chr1 | 23255177 | 23255178 | 1 | |
| Deletion | Chr8 | 27788735 | 27788736 | 1 | |
| Deletion | Chr1 | 37153001 | 37273000 | 119999 | 13 |
| Deletion | Chr1 | 38470856 | 38470867 | 11 | OsKitaake01g410900 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 20651275 | 20651278 | 2 | |
| Insertion | Chr8 | 10713819 | 10713826 | 6 | |
| Insertion | Chr2 | 13778278 | 13778280 | 1 | |
| Insertion | Chr4 | 10496893 | 10496945 | 51 |
Inversions: 6
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 11738871 | Chr1 | 2466676 | 2 |
| Translocation | Chr6 | 11740548 | Chr1 | 2466674 | 2 |