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Mutant Information

Mutant Name	FN3707-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3707-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3923482 G-T Hetero INTERGENIC
SBS Chr1 4488352 C-A Hetero INTRON
SBS Chr1 15859208 A-T Homo INTERGENIC
SBS Chr1 21845113 G-A Homo INTERGENIC
SBS Chr2 5773658 A-G Hetero INTERGENIC
SBS Chr2 12882051 A-T Hetero INTERGENIC
SBS Chr2 18004860 C-T Hetero INTERGENIC
SBS Chr2 19083396 C-T Hetero INTERGENIC
SBS Chr2 24709761 G-A Hetero INTERGENIC
SBS Chr2 33061848 C-G Hetero INTERGENIC
SBS Chr3 15575051 C-T Hetero INTERGENIC
SBS Chr3 30515150 G-A Hetero INTERGENIC
SBS Chr4 3984887 G-T Hetero INTERGENIC
SBS Chr4 4416615 T-A Hetero INTERGENIC
SBS Chr4 10015900 C-G Hetero INTERGENIC
SBS Chr4 36587157 C-A Hetero INTERGENIC
SBS Chr5 1929230 T-C Hetero INTERGENIC
SBS Chr5 18872466 C-T Homo INTERGENIC
SBS Chr5 23029182 A-G Hetero INTERGENIC
SBS Chr5 23073874 T-C Hetero INTERGENIC
SBS Chr5 27798371 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g254700
SBS Chr5 29163331 T-C Hetero INTRON
SBS Chr5 29564519 T-C Hetero INTERGENIC
SBS Chr6 3433122 C-A Hetero INTERGENIC
SBS Chr6 3695710 A-G Hetero INTRON
SBS Chr6 4846544 A-T Hetero INTRON
SBS Chr6 7982702 T-A Hetero INTERGENIC
SBS Chr6 8538937 A-G Hetero INTERGENIC
SBS Chr6 17630171 G-A Hetero INTERGENIC
SBS Chr6 20080399 G-A Hetero INTERGENIC
SBS Chr6 28868812 G-A Hetero INTERGENIC
SBS Chr7 15217616 G-A Hetero INTERGENIC
SBS Chr7 19360046 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake07g156900
SBS Chr7 20185028 G-A Hetero INTERGENIC
SBS Chr7 29244589 G-T Hetero SYNONYMOUS_CODING
SBS Chr8 10189514 A-G Hetero INTERGENIC
SBS Chr9 5433523 T-A Hetero INTERGENIC
SBS Chr9 18792208 G-A Hetero INTERGENIC
SBS Chr10 14001633 G-A Hetero INTERGENIC
SBS Chr11 2866829 C-T Homo INTERGENIC
SBS Chr11 5053205 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake11g064100
SBS Chr11 20579041 G-C Hetero INTERGENIC
SBS Chr11 21505122 T-A Hetero INTERGENIC
SBS Chr11 24074589 G-A Hetero INTERGENIC
SBS Chr11 25271060 G-A Hetero INTERGENIC
SBS Chr12 11340990 C-T Hetero INTERGENIC
SBS Chr12 12270558 G-T Hetero INTERGENIC
SBS Chr12 23647825 T-A Homo INTERGENIC
SBS Chr12 25873325 C-A Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 6775937 6775943 6
Deletion Chr9 11002402 11002413 11
Deletion Chr4 13587347 13587363 16
Deletion Chr7 13725001 13730000 4999
Deletion Chr1 14456442 14456455 13
Deletion Chr2 17761070 17761072 2
Deletion Chr8 22454232 22454233 1
Deletion Chr1 25126215 25126217 2
Deletion Chr2 27032938 27032939 1
Deletion Chr1 40145268 40145276 8

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 18035046 18035049 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 3871135 4194692 OsKitaake01g056100
Inversion Chr8 8028496 8604931
Inversion Chr2 12182997 12642857 OsKitaake02g138150
Inversion Chr2 12642861 13482687 OsKitaake02g149100

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 8653903 Chr1 17221950 OsKitaake10g053166
Translocation Chr12 21977934 Chr3 35703541 OsKitaake12g172400
Translocation Chr12 21981931 Chr3 35708512
Translocation Chr7 26013497 Chr3 35703543
Translocation Chr7 26014386 Chr1 3870720 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3923482	G-T	Hetero	INTERGENIC
SBS	Chr1	4488352	C-A	Hetero	INTRON
SBS	Chr1	15859208	A-T	Homo	INTERGENIC
SBS	Chr1	21845113	G-A	Homo	INTERGENIC
SBS	Chr2	5773658	A-G	Hetero	INTERGENIC
SBS	Chr2	12882051	A-T	Hetero	INTERGENIC
SBS	Chr2	18004860	C-T	Hetero	INTERGENIC
SBS	Chr2	19083396	C-T	Hetero	INTERGENIC
SBS	Chr2	24709761	G-A	Hetero	INTERGENIC
SBS	Chr2	33061848	C-G	Hetero	INTERGENIC
SBS	Chr3	15575051	C-T	Hetero	INTERGENIC
SBS	Chr3	30515150	G-A	Hetero	INTERGENIC
SBS	Chr4	3984887	G-T	Hetero	INTERGENIC
SBS	Chr4	4416615	T-A	Hetero	INTERGENIC
SBS	Chr4	10015900	C-G	Hetero	INTERGENIC
SBS	Chr4	36587157	C-A	Hetero	INTERGENIC
SBS	Chr5	1929230	T-C	Hetero	INTERGENIC
SBS	Chr5	18872466	C-T	Homo	INTERGENIC
SBS	Chr5	23029182	A-G	Hetero	INTERGENIC
SBS	Chr5	23073874	T-C	Hetero	INTERGENIC
SBS	Chr5	27798371	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g254700
SBS	Chr5	29163331	T-C	Hetero	INTRON
SBS	Chr5	29564519	T-C	Hetero	INTERGENIC
SBS	Chr6	3433122	C-A	Hetero	INTERGENIC
SBS	Chr6	3695710	A-G	Hetero	INTRON
SBS	Chr6	4846544	A-T	Hetero	INTRON
SBS	Chr6	7982702	T-A	Hetero	INTERGENIC
SBS	Chr6	8538937	A-G	Hetero	INTERGENIC
SBS	Chr6	17630171	G-A	Hetero	INTERGENIC
SBS	Chr6	20080399	G-A	Hetero	INTERGENIC
SBS	Chr6	28868812	G-A	Hetero	INTERGENIC
SBS	Chr7	15217616	G-A	Hetero	INTERGENIC
SBS	Chr7	19360046	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake07g156900
SBS	Chr7	20185028	G-A	Hetero	INTERGENIC
SBS	Chr7	29244589	G-T	Hetero	SYNONYMOUS_CODING
SBS	Chr8	10189514	A-G	Hetero	INTERGENIC
SBS	Chr9	5433523	T-A	Hetero	INTERGENIC
SBS	Chr9	18792208	G-A	Hetero	INTERGENIC
SBS	Chr10	14001633	G-A	Hetero	INTERGENIC
SBS	Chr11	2866829	C-T	Homo	INTERGENIC
SBS	Chr11	5053205	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake11g064100
SBS	Chr11	20579041	G-C	Hetero	INTERGENIC
SBS	Chr11	21505122	T-A	Hetero	INTERGENIC
SBS	Chr11	24074589	G-A	Hetero	INTERGENIC
SBS	Chr11	25271060	G-A	Hetero	INTERGENIC
SBS	Chr12	11340990	C-T	Hetero	INTERGENIC
SBS	Chr12	12270558	G-T	Hetero	INTERGENIC
SBS	Chr12	23647825	T-A	Homo	INTERGENIC
SBS	Chr12	25873325	C-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	6775937	6775943	6
Deletion	Chr9	11002402	11002413	11
Deletion	Chr4	13587347	13587363	16
Deletion	Chr7	13725001	13730000	4999
Deletion	Chr1	14456442	14456455	13
Deletion	Chr2	17761070	17761072	2
Deletion	Chr8	22454232	22454233	1
Deletion	Chr1	25126215	25126217	2
Deletion	Chr2	27032938	27032939	1
Deletion	Chr1	40145268	40145276	8

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	3871135	4194692	OsKitaake01g056100
Inversion	Chr8	8028496	8604931
Inversion	Chr2	12182997	12642857	OsKitaake02g138150
Inversion	Chr2	12642861	13482687	OsKitaake02g149100

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes