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| Mutant Information |
|---|
| Mutant Name | FN3708-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3708-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 20
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1169502 | C-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 14961721 | A-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 16060857 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 17840838 | T-C | Hetero | INTERGENIC | |
| SBS | Chr2 | 27022244 | T-G | Homo | INTERGENIC | |
| SBS | Chr3 | 31383579 | G-T | Homo | INTERGENIC | |
| SBS | Chr4 | 12550128 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 16280789 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 32995577 | A-T | Hetero | INTRON | |
| SBS | Chr5 | 9998691 | A-T | Homo | INTRON | |
| SBS | Chr6 | 14462948 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 24390586 | G-A | Homo | INTRON | |
| SBS | Chr8 | 25644182 | T-A | Homo | INTRON | |
| SBS | Chr8 | 25796117 | G-A | Homo | UTR_3_PRIME | |
| SBS | Chr9 | 6980836 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 11156053 | T-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 21875410 | A-T | Hetero | INTRON | |
| SBS | Chr11 | 12908361 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 13468119 | C-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 22341103 | C-A | Homo | INTERGENIC |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr4 | 178169 | 178178 | 9 | |
| Deletion | Chr11 | 2596001 | 2763000 | 166999 | 17 |
| Deletion | Chr10 | 9938025 | 9938033 | 8 | |
| Deletion | Chr1 | 10229616 | 10229621 | 5 | |
| Deletion | Chr11 | 22817285 | 22817299 | 14 | |
| Deletion | Chr3 | 23527406 | 23527408 | 2 | |
| Deletion | Chr12 | 24008806 | 24008818 | 12 | OsKitaake12g193100 |
| Deletion | Chr6 | 24485891 | 24485925 | 34 | |
| Deletion | Chr11 | 26570453 | 26570455 | 2 | |
| Deletion | Chr8 | 27359899 | 27359915 | 16 | |
| Deletion | Chr1 | 29850622 | 29850624 | 2 | |
| Deletion | Chr3 | 36259824 | 36259831 | 7 | OsKitaake03g401800 |
| Deletion | Chr1 | 40877936 | 40877938 | 2 | |
| Deletion | Chr1 | 42761903 | 42761906 | 3 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr7 | 13034825 | 13034827 | 1 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr10 | 15524911 | 16020600 | OsKitaake10g106100 |
| Inversion | Chr10 | 15524922 | 16020619 | OsKitaake10g106100 |
| Inversion | Chr2 | 31022284 | 31312152 | OsKitaake02g316900 |
| Inversion | Chr2 | 31022292 | 31665605 | OsKitaake02g316900 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr11 | 3379018 | Chr4 | 15735880 |