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Mutant Information

Mutant Name	FN3710-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3710-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 58

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 20951119 T-A Hetero INTERGENIC
SBS Chr1 22056630 G-A Homo INTERGENIC
SBS Chr1 25018966 A-G Hetero INTERGENIC
SBS Chr1 28303664 T-A Hetero INTERGENIC
SBS Chr1 30721616 C-A Homo INTERGENIC
SBS Chr1 31738425 T-G Hetero UTR_3_PRIME
SBS Chr1 31921368 A-T Homo UTR_5_PRIME
SBS Chr2 10523820 G-A Homo INTERGENIC
SBS Chr2 28166766 T-G Hetero INTERGENIC
SBS Chr3 9675664 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake03g131600
SBS Chr3 24699456 A-C Hetero INTERGENIC
SBS Chr3 26035446 A-G Hetero INTRON
SBS Chr3 32073369 G-C Hetero INTRON
SBS Chr3 33985309 T-C Hetero INTERGENIC
SBS Chr4 2253097 A-T Homo INTERGENIC
SBS Chr4 3423829 G-C Hetero INTERGENIC
SBS Chr4 5494996 A-G Hetero INTERGENIC
SBS Chr4 5572967 A-G Hetero INTERGENIC
SBS Chr4 6458011 C-A Hetero INTERGENIC
SBS Chr4 14447226 C-T Hetero INTERGENIC
SBS Chr4 17023161 C-A Hetero INTERGENIC
SBS Chr5 20542687 T-G Homo INTRON
SBS Chr5 22198646 T-A Hetero INTRON
SBS Chr6 5447420 C-G Hetero INTERGENIC
SBS Chr6 16140101 G-A Hetero INTERGENIC
SBS Chr6 17992673 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g165400
SBS Chr6 22038541 T-C Hetero INTERGENIC
SBS Chr6 22862919 T-C Hetero INTERGENIC
SBS Chr6 30868998 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake06g292000
SBS Chr7 3199759 T-A Hetero INTERGENIC
SBS Chr7 6250526 G-A Hetero INTERGENIC
SBS Chr7 20836335 G-A Homo SYNONYMOUS_CODING
SBS Chr7 26101432 T-C Hetero INTERGENIC
SBS Chr8 5292454 G-A Hetero SYNONYMOUS_CODING
SBS Chr8 11038481 C-T Hetero INTERGENIC
SBS Chr8 19200291 T-G Homo INTERGENIC
SBS Chr8 23016595 G-A Hetero INTERGENIC
SBS Chr8 23016598 G-A Hetero INTERGENIC
SBS Chr8 29205960 A-G Homo INTERGENIC
SBS Chr9 3812491 G-A Hetero INTRON
SBS Chr9 14214019 A-G Hetero INTERGENIC
SBS Chr9 15473152 A-C Hetero INTERGENIC
SBS Chr9 20462012 G-T Hetero INTERGENIC
SBS Chr10 3290322 C-T Homo INTERGENIC
SBS Chr10 4828853 T-C Homo INTERGENIC
SBS Chr10 20352905 G-A Homo INTERGENIC
SBS Chr11 5241791 T-A Hetero INTERGENIC
SBS Chr11 12859376 G-A Hetero INTERGENIC
SBS Chr11 21847066 C-G Hetero INTERGENIC
SBS Chr11 23827497 T-C Homo INTERGENIC
SBS Chr11 24708572 T-C Hetero INTERGENIC
SBS Chr12 1013415 A-G Hetero INTERGENIC
SBS Chr12 1732692 G-C Hetero UTR_5_PRIME
SBS Chr12 12492431 T-A Hetero INTERGENIC
SBS Chr12 17452457 C-T Hetero INTERGENIC
SBS Chr12 21467797 C-T Hetero INTERGENIC
SBS Chr12 22374452 A-G Hetero INTERGENIC
SBS Chr12 23186094 A-G Hetero INTERGENIC

Deletions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr2 1312376 1312377 1 OsKitaake02g020300
Deletion Chr12 7695001 8163000 467999 19
Deletion Chr5 8107524 8107525 1
Deletion Chr2 14936840 14936843 3
Deletion Chr10 18834693 18834694 1

Insertions: 1

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 12106069 12106072 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 30103680 30140830 OsKitaake04g231400
Inversion Chr4 30103880 30140829 OsKitaake04g231400
Inversion Chr4 35267298 35304559
Inversion Chr4 35267301 35304587

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr4 18024143 Chr2 2428074 OsKitaake02g035100
Translocation Chr4 18024153 Chr2 2427655 OsKitaake02g035100

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	20951119	T-A	Hetero	INTERGENIC
SBS	Chr1	22056630	G-A	Homo	INTERGENIC
SBS	Chr1	25018966	A-G	Hetero	INTERGENIC
SBS	Chr1	28303664	T-A	Hetero	INTERGENIC
SBS	Chr1	30721616	C-A	Homo	INTERGENIC
SBS	Chr1	31738425	T-G	Hetero	UTR_3_PRIME
SBS	Chr1	31921368	A-T	Homo	UTR_5_PRIME
SBS	Chr2	10523820	G-A	Homo	INTERGENIC
SBS	Chr2	28166766	T-G	Hetero	INTERGENIC
SBS	Chr3	9675664	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g131600
SBS	Chr3	24699456	A-C	Hetero	INTERGENIC
SBS	Chr3	26035446	A-G	Hetero	INTRON
SBS	Chr3	32073369	G-C	Hetero	INTRON
SBS	Chr3	33985309	T-C	Hetero	INTERGENIC
SBS	Chr4	2253097	A-T	Homo	INTERGENIC
SBS	Chr4	3423829	G-C	Hetero	INTERGENIC
SBS	Chr4	5494996	A-G	Hetero	INTERGENIC
SBS	Chr4	5572967	A-G	Hetero	INTERGENIC
SBS	Chr4	6458011	C-A	Hetero	INTERGENIC
SBS	Chr4	14447226	C-T	Hetero	INTERGENIC
SBS	Chr4	17023161	C-A	Hetero	INTERGENIC
SBS	Chr5	20542687	T-G	Homo	INTRON
SBS	Chr5	22198646	T-A	Hetero	INTRON
SBS	Chr6	5447420	C-G	Hetero	INTERGENIC
SBS	Chr6	16140101	G-A	Hetero	INTERGENIC
SBS	Chr6	17992673	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g165400
SBS	Chr6	22038541	T-C	Hetero	INTERGENIC
SBS	Chr6	22862919	T-C	Hetero	INTERGENIC
SBS	Chr6	30868998	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g292000
SBS	Chr7	3199759	T-A	Hetero	INTERGENIC
SBS	Chr7	6250526	G-A	Hetero	INTERGENIC
SBS	Chr7	20836335	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr7	26101432	T-C	Hetero	INTERGENIC
SBS	Chr8	5292454	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr8	11038481	C-T	Hetero	INTERGENIC
SBS	Chr8	19200291	T-G	Homo	INTERGENIC
SBS	Chr8	23016595	G-A	Hetero	INTERGENIC
SBS	Chr8	23016598	G-A	Hetero	INTERGENIC
SBS	Chr8	29205960	A-G	Homo	INTERGENIC
SBS	Chr9	3812491	G-A	Hetero	INTRON
SBS	Chr9	14214019	A-G	Hetero	INTERGENIC
SBS	Chr9	15473152	A-C	Hetero	INTERGENIC
SBS	Chr9	20462012	G-T	Hetero	INTERGENIC
SBS	Chr10	3290322	C-T	Homo	INTERGENIC
SBS	Chr10	4828853	T-C	Homo	INTERGENIC
SBS	Chr10	20352905	G-A	Homo	INTERGENIC
SBS	Chr11	5241791	T-A	Hetero	INTERGENIC
SBS	Chr11	12859376	G-A	Hetero	INTERGENIC
SBS	Chr11	21847066	C-G	Hetero	INTERGENIC
SBS	Chr11	23827497	T-C	Homo	INTERGENIC
SBS	Chr11	24708572	T-C	Hetero	INTERGENIC
SBS	Chr12	1013415	A-G	Hetero	INTERGENIC
SBS	Chr12	1732692	G-C	Hetero	UTR_5_PRIME
SBS	Chr12	12492431	T-A	Hetero	INTERGENIC
SBS	Chr12	17452457	C-T	Hetero	INTERGENIC
SBS	Chr12	21467797	C-T	Hetero	INTERGENIC
SBS	Chr12	22374452	A-G	Hetero	INTERGENIC
SBS	Chr12	23186094	A-G	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr2	1312376	1312377	1	OsKitaake02g020300
Deletion	Chr12	7695001	8163000	467999	19
Deletion	Chr5	8107524	8107525	1
Deletion	Chr2	14936840	14936843	3
Deletion	Chr10	18834693	18834694	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	30103680	30140830	OsKitaake04g231400
Inversion	Chr4	30103880	30140829	OsKitaake04g231400
Inversion	Chr4	35267298	35304559
Inversion	Chr4	35267301	35304587

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes