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Mutant Information

Mutant Name	FN3711-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3711-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 36

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 6664907 C-A Hetero INTERGENIC
SBS Chr1 8518215 A-G Homo INTERGENIC
SBS Chr1 15352309 C-G Homo INTERGENIC
SBS Chr1 19272827 C-T Homo INTERGENIC
SBS Chr1 20364871 G-C Hetero INTERGENIC
SBS Chr1 38631774 C-T Hetero INTERGENIC
SBS Chr2 5623531 T-C Homo INTRON
SBS Chr2 26009033 C-T Homo UTR_5_PRIME
SBS Chr2 28806519 G-A Homo INTERGENIC
SBS Chr3 764692 A-G Homo NON_SYNONYMOUS_CODING OsKitaake03g012000
SBS Chr3 16875979 A-G Hetero INTERGENIC
SBS Chr3 19706307 T-C Hetero INTERGENIC
SBS Chr3 33536272 A-T Hetero INTRON
SBS Chr3 36172207 A-T Hetero INTERGENIC
SBS Chr4 3317729 C-T Hetero INTERGENIC
SBS Chr4 13654676 A-T Hetero INTERGENIC
SBS Chr4 28040023 A-T Homo INTERGENIC
SBS Chr4 28977287 A-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g218300
SBS Chr5 4629605 C-T Hetero INTERGENIC
SBS Chr5 16220274 C-A Hetero INTERGENIC
SBS Chr6 9737626 C-T Homo INTERGENIC
SBS Chr6 10270619 G-T Hetero INTERGENIC
SBS Chr7 6597125 T-G Hetero INTERGENIC
SBS Chr8 14051953 G-T Hetero INTERGENIC
SBS Chr8 21746281 C-T Hetero INTERGENIC
SBS Chr8 25652865 G-A Hetero INTERGENIC
SBS Chr8 26232554 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake08g209400
SBS Chr9 297636 G-A Hetero INTERGENIC
SBS Chr9 4252469 A-C Hetero INTERGENIC
SBS Chr9 18146462 T-C Hetero INTERGENIC
SBS Chr10 10153248 C-T Hetero INTERGENIC
SBS Chr10 18282341 G-A Hetero INTERGENIC
SBS Chr10 19110653 T-C Hetero INTRON
SBS Chr10 22400584 C-T Hetero INTERGENIC
SBS Chr11 10772687 A-G Homo INTERGENIC
SBS Chr12 20426023 T-A Hetero UTR_3_PRIME

Deletions: 18

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr1 1235588 1235597 9
Deletion Chr12 1527673 1527682 9
Deletion Chr3 5699436 5699443 7
Deletion Chr2 6696771 6696773 2
Deletion Chr10 8039848 8039850 2
Deletion Chr5 8145001 8339000 193999 10
Deletion Chr1 8517648 8517671 23
Deletion Chr8 12835299 12835306 7
Deletion Chr7 13765663 13765664 1
Deletion Chr4 16087666 16087670 4
Deletion Chr3 19204791 19204792 1
Deletion Chr6 19226130 19226151 21
Deletion Chr10 19457223 19457225 2
Deletion Chr9 20850064 20850067 3
Deletion Chr1 29155449 29155450 1
Deletion Chr4 29470751 29470753 2
Deletion Chr1 35851288 35851299 11 OsKitaake01g380000
Deletion Chr2 36285684 36285691 7

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 26827826 26827829 2
Insertion Chr2 27429058 27429061 2
Insertion Chr4 26851357 26851359 1
Insertion Chr9 20040518 20040521 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	6664907	C-A	Hetero	INTERGENIC
SBS	Chr1	8518215	A-G	Homo	INTERGENIC
SBS	Chr1	15352309	C-G	Homo	INTERGENIC
SBS	Chr1	19272827	C-T	Homo	INTERGENIC
SBS	Chr1	20364871	G-C	Hetero	INTERGENIC
SBS	Chr1	38631774	C-T	Hetero	INTERGENIC
SBS	Chr2	5623531	T-C	Homo	INTRON
SBS	Chr2	26009033	C-T	Homo	UTR_5_PRIME
SBS	Chr2	28806519	G-A	Homo	INTERGENIC
SBS	Chr3	764692	A-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g012000
SBS	Chr3	16875979	A-G	Hetero	INTERGENIC
SBS	Chr3	19706307	T-C	Hetero	INTERGENIC
SBS	Chr3	33536272	A-T	Hetero	INTRON
SBS	Chr3	36172207	A-T	Hetero	INTERGENIC
SBS	Chr4	3317729	C-T	Hetero	INTERGENIC
SBS	Chr4	13654676	A-T	Hetero	INTERGENIC
SBS	Chr4	28040023	A-T	Homo	INTERGENIC
SBS	Chr4	28977287	A-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g218300
SBS	Chr5	4629605	C-T	Hetero	INTERGENIC
SBS	Chr5	16220274	C-A	Hetero	INTERGENIC
SBS	Chr6	9737626	C-T	Homo	INTERGENIC
SBS	Chr6	10270619	G-T	Hetero	INTERGENIC
SBS	Chr7	6597125	T-G	Hetero	INTERGENIC
SBS	Chr8	14051953	G-T	Hetero	INTERGENIC
SBS	Chr8	21746281	C-T	Hetero	INTERGENIC
SBS	Chr8	25652865	G-A	Hetero	INTERGENIC
SBS	Chr8	26232554	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake08g209400
SBS	Chr9	297636	G-A	Hetero	INTERGENIC
SBS	Chr9	4252469	A-C	Hetero	INTERGENIC
SBS	Chr9	18146462	T-C	Hetero	INTERGENIC
SBS	Chr10	10153248	C-T	Hetero	INTERGENIC
SBS	Chr10	18282341	G-A	Hetero	INTERGENIC
SBS	Chr10	19110653	T-C	Hetero	INTRON
SBS	Chr10	22400584	C-T	Hetero	INTERGENIC
SBS	Chr11	10772687	A-G	Homo	INTERGENIC
SBS	Chr12	20426023	T-A	Hetero	UTR_3_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr1	1235588	1235597	9
Deletion	Chr12	1527673	1527682	9
Deletion	Chr3	5699436	5699443	7
Deletion	Chr2	6696771	6696773	2
Deletion	Chr10	8039848	8039850	2
Deletion	Chr5	8145001	8339000	193999	10
Deletion	Chr1	8517648	8517671	23
Deletion	Chr8	12835299	12835306	7
Deletion	Chr7	13765663	13765664	1
Deletion	Chr4	16087666	16087670	4
Deletion	Chr3	19204791	19204792	1
Deletion	Chr6	19226130	19226151	21
Deletion	Chr10	19457223	19457225	2
Deletion	Chr9	20850064	20850067	3
Deletion	Chr1	29155449	29155450	1
Deletion	Chr4	29470751	29470753	2
Deletion	Chr1	35851288	35851299	11	OsKitaake01g380000
Deletion	Chr2	36285684	36285691	7

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes