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Mutant Information

Mutant Name	FN3712-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3712-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3358908 T-C Hetero INTERGENIC
SBS Chr1 7744339 C-A Hetero UTR_3_PRIME
SBS Chr2 31266162 G-A Hetero INTERGENIC
SBS Chr3 2036327 G-A Hetero INTERGENIC
SBS Chr3 2591621 A-G Homo INTERGENIC
SBS Chr3 8635733 T-G Homo INTERGENIC
SBS Chr3 8799048 G-A Homo INTERGENIC
SBS Chr3 17684128 A-G Hetero INTERGENIC
SBS Chr3 17685967 C-T Hetero INTERGENIC
SBS Chr4 4418136 C-T Hetero INTERGENIC
SBS Chr4 9390706 C-A Hetero INTERGENIC
SBS Chr4 11958758 T-C Hetero INTERGENIC
SBS Chr4 17970175 G-A Hetero INTERGENIC
SBS Chr4 18089455 G-A Hetero INTERGENIC
SBS Chr4 18089476 T-A Hetero INTERGENIC
SBS Chr5 2661883 A-T Hetero INTERGENIC
SBS Chr6 19518760 G-A Hetero INTERGENIC
SBS Chr6 21183561 G-A Hetero INTERGENIC
SBS Chr6 23268986 A-C Hetero INTERGENIC
SBS Chr6 24193119 G-T Hetero INTERGENIC
SBS Chr7 8947985 T-C Hetero INTERGENIC
SBS Chr7 18106203 G-A Hetero INTRON
SBS Chr7 21323468 G-A Hetero INTERGENIC
SBS Chr8 3923817 G-A Hetero INTERGENIC
SBS Chr8 6474959 T-A Hetero INTERGENIC
SBS Chr8 27959433 G-A Homo INTERGENIC
SBS Chr10 5318875 G-A Hetero INTERGENIC
SBS Chr10 13145000 C-T Hetero INTERGENIC
SBS Chr10 13407013 G-A Hetero INTERGENIC
SBS Chr10 15110208 G-T Hetero INTERGENIC
SBS Chr10 20902172 G-A Hetero INTERGENIC
SBS Chr11 2629925 G-A Hetero START_GAINED
SBS Chr11 11503379 G-A Homo INTERGENIC
SBS Chr11 11636916 C-G Hetero INTERGENIC
SBS Chr11 29219019 T-G Homo INTERGENIC
SBS Chr12 13351003 T-A Homo INTERGENIC
SBS Chr12 18228778 C-T Hetero INTERGENIC

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 5280826 5280827 1
Deletion Chr9 12829439 12829447 8
Deletion Chr10 13332011 13332017 6
Deletion Chr11 18822277 18822281 4
Deletion Chr6 19265649 19265650 1
Deletion Chr8 22110101 22110105 4
Deletion Chr8 24154838 24154840 2
Deletion Chr12 25357001 25389000 31999 5
Deletion Chr1 30814216 30814218 2 OsKitaake01g305200
Deletion Chr1 41644106 41644107 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 13135367 13135370 2
Insertion Chr6 5682607 5682611 3
Insertion Chr11 10035939 10035942 2

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 1415321 1713288
Inversion Chr3 1415339 1715579 OsKitaake03g024500

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr3 15439444 Chr2 2882618 OsKitaake02g041300
Translocation Chr3 15439729 Chr2 2882611 OsKitaake02g041300

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3358908	T-C	Hetero	INTERGENIC
SBS	Chr1	7744339	C-A	Hetero	UTR_3_PRIME
SBS	Chr2	31266162	G-A	Hetero	INTERGENIC
SBS	Chr3	2036327	G-A	Hetero	INTERGENIC
SBS	Chr3	2591621	A-G	Homo	INTERGENIC
SBS	Chr3	8635733	T-G	Homo	INTERGENIC
SBS	Chr3	8799048	G-A	Homo	INTERGENIC
SBS	Chr3	17684128	A-G	Hetero	INTERGENIC
SBS	Chr3	17685967	C-T	Hetero	INTERGENIC
SBS	Chr4	4418136	C-T	Hetero	INTERGENIC
SBS	Chr4	9390706	C-A	Hetero	INTERGENIC
SBS	Chr4	11958758	T-C	Hetero	INTERGENIC
SBS	Chr4	17970175	G-A	Hetero	INTERGENIC
SBS	Chr4	18089455	G-A	Hetero	INTERGENIC
SBS	Chr4	18089476	T-A	Hetero	INTERGENIC
SBS	Chr5	2661883	A-T	Hetero	INTERGENIC
SBS	Chr6	19518760	G-A	Hetero	INTERGENIC
SBS	Chr6	21183561	G-A	Hetero	INTERGENIC
SBS	Chr6	23268986	A-C	Hetero	INTERGENIC
SBS	Chr6	24193119	G-T	Hetero	INTERGENIC
SBS	Chr7	8947985	T-C	Hetero	INTERGENIC
SBS	Chr7	18106203	G-A	Hetero	INTRON
SBS	Chr7	21323468	G-A	Hetero	INTERGENIC
SBS	Chr8	3923817	G-A	Hetero	INTERGENIC
SBS	Chr8	6474959	T-A	Hetero	INTERGENIC
SBS	Chr8	27959433	G-A	Homo	INTERGENIC
SBS	Chr10	5318875	G-A	Hetero	INTERGENIC
SBS	Chr10	13145000	C-T	Hetero	INTERGENIC
SBS	Chr10	13407013	G-A	Hetero	INTERGENIC
SBS	Chr10	15110208	G-T	Hetero	INTERGENIC
SBS	Chr10	20902172	G-A	Hetero	INTERGENIC
SBS	Chr11	2629925	G-A	Hetero	START_GAINED
SBS	Chr11	11503379	G-A	Homo	INTERGENIC
SBS	Chr11	11636916	C-G	Hetero	INTERGENIC
SBS	Chr11	29219019	T-G	Homo	INTERGENIC
SBS	Chr12	13351003	T-A	Homo	INTERGENIC
SBS	Chr12	18228778	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	5280826	5280827	1
Deletion	Chr9	12829439	12829447	8
Deletion	Chr10	13332011	13332017	6
Deletion	Chr11	18822277	18822281	4
Deletion	Chr6	19265649	19265650	1
Deletion	Chr8	22110101	22110105	4
Deletion	Chr8	24154838	24154840	2
Deletion	Chr12	25357001	25389000	31999	5
Deletion	Chr1	30814216	30814218	2	OsKitaake01g305200
Deletion	Chr1	41644106	41644107	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	1415321	1713288
Inversion	Chr3	1415339	1715579	OsKitaake03g024500

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes