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Mutant Information

Mutant Name	FN3713-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3713-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 49

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 8722867 A-G Hetero INTERGENIC
SBS Chr1 17835438 G-T Hetero INTERGENIC
SBS Chr1 25304080 A-T Hetero INTERGENIC
SBS Chr1 25304081 C-A Hetero INTERGENIC
SBS Chr1 32592539 C-T Hetero INTERGENIC
SBS Chr2 5597954 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g077300
SBS Chr2 14806707 T-C Homo INTERGENIC
SBS Chr2 21407316 G-A Homo INTERGENIC
SBS Chr2 26882234 T-C Homo INTERGENIC
SBS Chr3 23832655 G-T Hetero INTERGENIC
SBS Chr3 24244207 C-T Hetero INTERGENIC
SBS Chr3 30329350 G-A Hetero INTERGENIC
SBS Chr3 32077819 T-C Hetero INTERGENIC
SBS Chr4 2052146 G-T Hetero INTERGENIC
SBS Chr4 31899919 A-G Hetero INTERGENIC
SBS Chr5 4847504 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake05g054200
SBS Chr5 11109799 C-T Hetero INTERGENIC
SBS Chr5 24844685 G-C Homo INTERGENIC
SBS Chr5 29238212 C-T Hetero INTERGENIC
SBS Chr6 11069047 A-G Hetero INTERGENIC
SBS Chr6 17307469 C-T Hetero INTERGENIC
SBS Chr6 24914041 C-A Hetero INTERGENIC
SBS Chr7 2657660 T-A Hetero INTRON
SBS Chr7 9221102 C-T Homo INTRON
SBS Chr7 10316268 T-C Hetero INTERGENIC
SBS Chr7 11462228 C-T Hetero INTERGENIC
SBS Chr7 16063022 G-A Hetero INTERGENIC
SBS Chr7 17463436 G-T Hetero INTRON
SBS Chr7 18235401 C-A Hetero INTERGENIC
SBS Chr7 26718395 A-C Hetero INTERGENIC
SBS Chr7 28689828 T-A Homo INTERGENIC
SBS Chr8 13731460 C-T Homo INTERGENIC
SBS Chr8 23908624 G-T Homo INTERGENIC
SBS Chr8 26626972 G-A Hetero INTERGENIC
SBS Chr9 8279362 A-T Hetero INTERGENIC
SBS Chr9 10908970 G-A Hetero INTERGENIC
SBS Chr9 11420524 A-T Hetero INTERGENIC
SBS Chr9 19770617 C-A Homo INTERGENIC
SBS Chr9 21769546 T-G Hetero INTERGENIC
SBS Chr10 16192444 C-T Homo SYNONYMOUS_CODING
SBS Chr11 1067717 G-A Homo SYNONYMOUS_CODING
SBS Chr11 11036845 A-G Hetero INTERGENIC
SBS Chr11 11348282 A-C Homo INTERGENIC
SBS Chr11 12538666 G-T Homo INTERGENIC
SBS Chr11 26791246 T-C Hetero INTRON
SBS Chr12 713667 C-A Hetero INTERGENIC
SBS Chr12 6957034 G-T Hetero INTERGENIC
SBS Chr12 14148175 C-T Homo INTERGENIC
SBS Chr12 18303025 C-T Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr12 1016536 1016557 21 OsKitaake12g015400
Deletion Chr5 1315872 1315877 5
Deletion Chr2 6834789 6834790 1
Deletion Chr8 8125092 8125218 126 OsKitaake08g074300
Deletion Chr10 10242544 10242547 3
Deletion Chr1 10269037 10269040 3
Deletion Chr9 11240299 11240514 215
Deletion Chr10 11947046 11947048 2
Deletion Chr5 16661094 16661113 19
Deletion Chr2 16950209 16950211 2
Deletion Chr9 19617187 19617188 1 OsKitaake09g160500
Deletion Chr12 20422232 20422238 6
Deletion Chr11 20593599 20593601 2
Deletion Chr6 29610603 29610613 10
Deletion Chr3 37092693 37092694 1

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 8398110 8398112 1 OsKitaake01g104600
Insertion Chr1 12550017 12550020 2
Insertion Chr7 14688816 14688819 2
Insertion Chr8 16004741 16004744 2
Insertion Chr10 15020345 15020348 2
Insertion Chr11 21493285 21493289 3
Insertion Chr12 20685322 20685327 4
Insertion Chr6 7853292 7853295 2

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2972827 Chr7 29538665
Translocation Chr10 2978635 Chr7 29540321 OsKitaake07g284700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	8722867	A-G	Hetero	INTERGENIC
SBS	Chr1	17835438	G-T	Hetero	INTERGENIC
SBS	Chr1	25304080	A-T	Hetero	INTERGENIC
SBS	Chr1	25304081	C-A	Hetero	INTERGENIC
SBS	Chr1	32592539	C-T	Hetero	INTERGENIC
SBS	Chr2	5597954	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g077300
SBS	Chr2	14806707	T-C	Homo	INTERGENIC
SBS	Chr2	21407316	G-A	Homo	INTERGENIC
SBS	Chr2	26882234	T-C	Homo	INTERGENIC
SBS	Chr3	23832655	G-T	Hetero	INTERGENIC
SBS	Chr3	24244207	C-T	Hetero	INTERGENIC
SBS	Chr3	30329350	G-A	Hetero	INTERGENIC
SBS	Chr3	32077819	T-C	Hetero	INTERGENIC
SBS	Chr4	2052146	G-T	Hetero	INTERGENIC
SBS	Chr4	31899919	A-G	Hetero	INTERGENIC
SBS	Chr5	4847504	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake05g054200
SBS	Chr5	11109799	C-T	Hetero	INTERGENIC
SBS	Chr5	24844685	G-C	Homo	INTERGENIC
SBS	Chr5	29238212	C-T	Hetero	INTERGENIC
SBS	Chr6	11069047	A-G	Hetero	INTERGENIC
SBS	Chr6	17307469	C-T	Hetero	INTERGENIC
SBS	Chr6	24914041	C-A	Hetero	INTERGENIC
SBS	Chr7	2657660	T-A	Hetero	INTRON
SBS	Chr7	9221102	C-T	Homo	INTRON
SBS	Chr7	10316268	T-C	Hetero	INTERGENIC
SBS	Chr7	11462228	C-T	Hetero	INTERGENIC
SBS	Chr7	16063022	G-A	Hetero	INTERGENIC
SBS	Chr7	17463436	G-T	Hetero	INTRON
SBS	Chr7	18235401	C-A	Hetero	INTERGENIC
SBS	Chr7	26718395	A-C	Hetero	INTERGENIC
SBS	Chr7	28689828	T-A	Homo	INTERGENIC
SBS	Chr8	13731460	C-T	Homo	INTERGENIC
SBS	Chr8	23908624	G-T	Homo	INTERGENIC
SBS	Chr8	26626972	G-A	Hetero	INTERGENIC
SBS	Chr9	8279362	A-T	Hetero	INTERGENIC
SBS	Chr9	10908970	G-A	Hetero	INTERGENIC
SBS	Chr9	11420524	A-T	Hetero	INTERGENIC
SBS	Chr9	19770617	C-A	Homo	INTERGENIC
SBS	Chr9	21769546	T-G	Hetero	INTERGENIC
SBS	Chr10	16192444	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr11	1067717	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr11	11036845	A-G	Hetero	INTERGENIC
SBS	Chr11	11348282	A-C	Homo	INTERGENIC
SBS	Chr11	12538666	G-T	Homo	INTERGENIC
SBS	Chr11	26791246	T-C	Hetero	INTRON
SBS	Chr12	713667	C-A	Hetero	INTERGENIC
SBS	Chr12	6957034	G-T	Hetero	INTERGENIC
SBS	Chr12	14148175	C-T	Homo	INTERGENIC
SBS	Chr12	18303025	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr12	1016536	1016557	21	OsKitaake12g015400
Deletion	Chr5	1315872	1315877	5
Deletion	Chr2	6834789	6834790	1
Deletion	Chr8	8125092	8125218	126	OsKitaake08g074300
Deletion	Chr10	10242544	10242547	3
Deletion	Chr1	10269037	10269040	3
Deletion	Chr9	11240299	11240514	215
Deletion	Chr10	11947046	11947048	2
Deletion	Chr5	16661094	16661113	19
Deletion	Chr2	16950209	16950211	2
Deletion	Chr9	19617187	19617188	1	OsKitaake09g160500
Deletion	Chr12	20422232	20422238	6
Deletion	Chr11	20593599	20593601	2
Deletion	Chr6	29610603	29610613	10
Deletion	Chr3	37092693	37092694	1

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	2972827	Chr7	29538665
Translocation	Chr10	2978635	Chr7	29540321	OsKitaake07g284700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes