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Mutant Information

Mutant Name	FN3714-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3714-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 60

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 5376896 T-A Hetero INTERGENIC
SBS Chr1 6207421 G-T Hetero INTERGENIC
SBS Chr1 10199979 C-A Hetero INTERGENIC
SBS Chr1 10703541 T-C Hetero INTERGENIC
SBS Chr1 15767034 C-T Hetero INTERGENIC
SBS Chr1 17427452 A-T Hetero INTERGENIC
SBS Chr1 27196635 G-A Hetero INTERGENIC
SBS Chr1 28019212 G-A Hetero START_GAINED
SBS Chr1 30127672 G-A Hetero INTRON
SBS Chr1 40199693 G-T Homo INTRON
SBS Chr2 4128099 G-A Homo INTERGENIC
SBS Chr2 8545898 G-A Hetero INTERGENIC
SBS Chr2 16979325 T-A Hetero INTERGENIC
SBS Chr2 17009052 C-T Hetero INTERGENIC
SBS Chr2 17173219 C-T Hetero INTERGENIC
SBS Chr3 18181058 G-A Hetero INTERGENIC
SBS Chr3 19668990 A-C Hetero INTRON
SBS Chr3 24903724 G-A Homo INTERGENIC
SBS Chr3 36916569 C-G Hetero INTERGENIC
SBS Chr4 3510003 T-G Homo INTERGENIC
SBS Chr4 3547185 G-A Homo INTERGENIC
SBS Chr4 7247386 C-T Hetero INTERGENIC
SBS Chr4 24824004 T-C Hetero INTERGENIC
SBS Chr4 25165110 C-T Hetero INTERGENIC
SBS Chr4 27187665 G-A Hetero INTERGENIC
SBS Chr4 29518333 A-G Hetero INTERGENIC
SBS Chr4 30188730 T-C Homo NON_SYNONYMOUS_CODING OsKitaake04g232300
SBS Chr4 31034952 G-C Homo INTERGENIC
SBS Chr4 32995762 A-T Hetero INTRON
SBS Chr4 32995766 A-G Hetero INTRON
SBS Chr5 16263232 G-A Hetero INTERGENIC
SBS Chr6 3958661 A-G Hetero INTERGENIC
SBS Chr6 15891631 T-A Homo INTERGENIC
SBS Chr6 16161266 C-T Hetero INTERGENIC
SBS Chr6 23566828 G-A Homo INTERGENIC
SBS Chr6 28776556 G-A Hetero INTERGENIC
SBS Chr7 216765 T-C Hetero INTRON
SBS Chr7 4455716 T-A Hetero INTERGENIC
SBS Chr7 7712631 C-G Hetero INTERGENIC
SBS Chr7 11492488 G-A Hetero INTERGENIC
SBS Chr7 13491162 A-T Hetero INTERGENIC
SBS Chr8 690664 T-C Hetero INTRON
SBS Chr8 2398841 T-G Homo INTERGENIC
SBS Chr8 21002408 G-A Homo INTERGENIC
SBS Chr9 1667122 C-T Hetero INTERGENIC
SBS Chr9 11270048 C-T Hetero INTERGENIC
SBS Chr10 830765 G-A Hetero UTR_3_PRIME
SBS Chr10 11663833 T-A Homo NON_SYNONYMOUS_CODING OsKitaake10g069501
SBS Chr10 12929120 T-C Hetero INTERGENIC
SBS Chr10 22461161 T-A Hetero INTERGENIC
SBS Chr10 22461162 C-T Hetero INTERGENIC
SBS Chr10 22461163 A-T Hetero INTERGENIC
SBS Chr11 19207278 G-A Hetero INTERGENIC
SBS Chr11 21748961 C-T Homo INTERGENIC
SBS Chr11 21748962 C-T Homo INTERGENIC
SBS Chr12 8485740 G-A Hetero INTERGENIC
SBS Chr12 14397079 T-C Hetero INTERGENIC
SBS Chr12 18056696 C-A Hetero UTR_5_PRIME
SBS Chr12 19528496 G-A Homo INTERGENIC
SBS Chr12 22822352 C-G Homo NON_SYNONYMOUS_CODING OsKitaake12g180200

Deletions: 44

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1446162 1446163 1
Deletion Chr5 1549765 1549770 5
Deletion Chr7 2445817 2445820 3
Deletion Chr5 2481545 2481547 2
Deletion Chr7 3080202 3080205 3
Deletion Chr12 3591659 3591670 11
Deletion Chr5 5226001 5234000 7999 2
Deletion Chr10 5658564 5658594 30
Deletion Chr12 6686135 6686137 2
Deletion Chr3 8260002 8260013 11
Deletion Chr10 8323818 8323819 1
Deletion Chr12 8620378 8620390 12
Deletion Chr1 9244846 9244850 4
Deletion Chr1 9330585 9330587 2
Deletion Chr2 9822337 9822338 1
Deletion Chr3 10747220 10747222 2
Deletion Chr1 10856297 10856302 5
Deletion Chr1 10981001 11001000 19999 7
Deletion Chr6 11412350 11412353 3
Deletion Chr4 11609287 11609288 1
Deletion Chr5 12175559 12175571 12
Deletion Chr9 13399964 13399965 1
Deletion Chr11 13425686 13425687 1
Deletion Chr12 14678700 14678715 15
Deletion Chr10 15033359 15033374 15
Deletion Chr12 16113469 16113479 10
Deletion Chr3 16531925 16531926 1
Deletion Chr8 16801694 16801695 1
Deletion Chr5 16962778 16962780 2
Deletion Chr2 18680384 18680389 5
Deletion Chr11 19640129 19640130 1
Deletion Chr2 20943686 20943701 15
Deletion Chr11 21038412 21038415 3
Deletion Chr7 21113854 21113862 8
Deletion Chr12 22010477 22010489 12
Deletion Chr3 22621295 22621300 5
Deletion Chr1 23222570 23222572 2
Deletion Chr8 23368221 23368243 22
Deletion Chr4 25571429 25571434 5
Deletion Chr12 25971977 25971990 13
Deletion Chr4 34313737 34313743 6
Deletion Chr3 34911488 34911489 1 OsKitaake03g381200
Deletion Chr4 34996898 34996900 2
Deletion Chr2 36148782 36148784 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 56230 56233 2
Insertion Chr7 705290 705296 5
Insertion Chr7 17639607 17639610 2
Insertion Chr11 21352746 21352749 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr7 1987398 2037318 OsKitaake07g027100
Inversion Chr7 1987573 2037329 OsKitaake07g027100
Inversion Chr7 21106242 21123448
Inversion Chr7 21106707 21123651

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	5376896	T-A	Hetero	INTERGENIC
SBS	Chr1	6207421	G-T	Hetero	INTERGENIC
SBS	Chr1	10199979	C-A	Hetero	INTERGENIC
SBS	Chr1	10703541	T-C	Hetero	INTERGENIC
SBS	Chr1	15767034	C-T	Hetero	INTERGENIC
SBS	Chr1	17427452	A-T	Hetero	INTERGENIC
SBS	Chr1	27196635	G-A	Hetero	INTERGENIC
SBS	Chr1	28019212	G-A	Hetero	START_GAINED
SBS	Chr1	30127672	G-A	Hetero	INTRON
SBS	Chr1	40199693	G-T	Homo	INTRON
SBS	Chr2	4128099	G-A	Homo	INTERGENIC
SBS	Chr2	8545898	G-A	Hetero	INTERGENIC
SBS	Chr2	16979325	T-A	Hetero	INTERGENIC
SBS	Chr2	17009052	C-T	Hetero	INTERGENIC
SBS	Chr2	17173219	C-T	Hetero	INTERGENIC
SBS	Chr3	18181058	G-A	Hetero	INTERGENIC
SBS	Chr3	19668990	A-C	Hetero	INTRON
SBS	Chr3	24903724	G-A	Homo	INTERGENIC
SBS	Chr3	36916569	C-G	Hetero	INTERGENIC
SBS	Chr4	3510003	T-G	Homo	INTERGENIC
SBS	Chr4	3547185	G-A	Homo	INTERGENIC
SBS	Chr4	7247386	C-T	Hetero	INTERGENIC
SBS	Chr4	24824004	T-C	Hetero	INTERGENIC
SBS	Chr4	25165110	C-T	Hetero	INTERGENIC
SBS	Chr4	27187665	G-A	Hetero	INTERGENIC
SBS	Chr4	29518333	A-G	Hetero	INTERGENIC
SBS	Chr4	30188730	T-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake04g232300
SBS	Chr4	31034952	G-C	Homo	INTERGENIC
SBS	Chr4	32995762	A-T	Hetero	INTRON
SBS	Chr4	32995766	A-G	Hetero	INTRON
SBS	Chr5	16263232	G-A	Hetero	INTERGENIC
SBS	Chr6	3958661	A-G	Hetero	INTERGENIC
SBS	Chr6	15891631	T-A	Homo	INTERGENIC
SBS	Chr6	16161266	C-T	Hetero	INTERGENIC
SBS	Chr6	23566828	G-A	Homo	INTERGENIC
SBS	Chr6	28776556	G-A	Hetero	INTERGENIC
SBS	Chr7	216765	T-C	Hetero	INTRON
SBS	Chr7	4455716	T-A	Hetero	INTERGENIC
SBS	Chr7	7712631	C-G	Hetero	INTERGENIC
SBS	Chr7	11492488	G-A	Hetero	INTERGENIC
SBS	Chr7	13491162	A-T	Hetero	INTERGENIC
SBS	Chr8	690664	T-C	Hetero	INTRON
SBS	Chr8	2398841	T-G	Homo	INTERGENIC
SBS	Chr8	21002408	G-A	Homo	INTERGENIC
SBS	Chr9	1667122	C-T	Hetero	INTERGENIC
SBS	Chr9	11270048	C-T	Hetero	INTERGENIC
SBS	Chr10	830765	G-A	Hetero	UTR_3_PRIME
SBS	Chr10	11663833	T-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake10g069501
SBS	Chr10	12929120	T-C	Hetero	INTERGENIC
SBS	Chr10	22461161	T-A	Hetero	INTERGENIC
SBS	Chr10	22461162	C-T	Hetero	INTERGENIC
SBS	Chr10	22461163	A-T	Hetero	INTERGENIC
SBS	Chr11	19207278	G-A	Hetero	INTERGENIC
SBS	Chr11	21748961	C-T	Homo	INTERGENIC
SBS	Chr11	21748962	C-T	Homo	INTERGENIC
SBS	Chr12	8485740	G-A	Hetero	INTERGENIC
SBS	Chr12	14397079	T-C	Hetero	INTERGENIC
SBS	Chr12	18056696	C-A	Hetero	UTR_5_PRIME
SBS	Chr12	19528496	G-A	Homo	INTERGENIC
SBS	Chr12	22822352	C-G	Homo	NON_SYNONYMOUS_CODING	OsKitaake12g180200

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1446162	1446163	1
Deletion	Chr5	1549765	1549770	5
Deletion	Chr7	2445817	2445820	3
Deletion	Chr5	2481545	2481547	2
Deletion	Chr7	3080202	3080205	3
Deletion	Chr12	3591659	3591670	11
Deletion	Chr5	5226001	5234000	7999	2
Deletion	Chr10	5658564	5658594	30
Deletion	Chr12	6686135	6686137	2
Deletion	Chr3	8260002	8260013	11
Deletion	Chr10	8323818	8323819	1
Deletion	Chr12	8620378	8620390	12
Deletion	Chr1	9244846	9244850	4
Deletion	Chr1	9330585	9330587	2
Deletion	Chr2	9822337	9822338	1
Deletion	Chr3	10747220	10747222	2
Deletion	Chr1	10856297	10856302	5
Deletion	Chr1	10981001	11001000	19999	7
Deletion	Chr6	11412350	11412353	3
Deletion	Chr4	11609287	11609288	1
Deletion	Chr5	12175559	12175571	12
Deletion	Chr9	13399964	13399965	1
Deletion	Chr11	13425686	13425687	1
Deletion	Chr12	14678700	14678715	15
Deletion	Chr10	15033359	15033374	15
Deletion	Chr12	16113469	16113479	10
Deletion	Chr3	16531925	16531926	1
Deletion	Chr8	16801694	16801695	1
Deletion	Chr5	16962778	16962780	2
Deletion	Chr2	18680384	18680389	5
Deletion	Chr11	19640129	19640130	1
Deletion	Chr2	20943686	20943701	15
Deletion	Chr11	21038412	21038415	3
Deletion	Chr7	21113854	21113862	8
Deletion	Chr12	22010477	22010489	12
Deletion	Chr3	22621295	22621300	5
Deletion	Chr1	23222570	23222572	2
Deletion	Chr8	23368221	23368243	22
Deletion	Chr4	25571429	25571434	5
Deletion	Chr12	25971977	25971990	13
Deletion	Chr4	34313737	34313743	6
Deletion	Chr3	34911488	34911489	1	OsKitaake03g381200
Deletion	Chr4	34996898	34996900	2
Deletion	Chr2	36148782	36148784	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr7	1987398	2037318	OsKitaake07g027100
Inversion	Chr7	1987573	2037329	OsKitaake07g027100
Inversion	Chr7	21106242	21123448
Inversion	Chr7	21106707	21123651

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes