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Mutant Information

SOS indicates the sequenced line is sterile and seeds from siblings are available.

Mutant Name	FN3716-S [Download]
Generation	M2-SOS
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3716-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 7839807 T-C Hetero INTRON
SBS Chr2 28110728 C-T Hetero INTRON
SBS Chr3 34855822 C-G Hetero INTERGENIC
SBS Chr3 37486194 T-C Hetero INTERGENIC
SBS Chr4 7882499 C-T Hetero INTERGENIC
SBS Chr4 8146222 T-C Hetero INTERGENIC
SBS Chr4 16976649 C-A Hetero INTERGENIC
SBS Chr4 28444058 G-A Hetero INTERGENIC
SBS Chr5 3683192 T-A Homo INTERGENIC
SBS Chr5 12620930 G-A Hetero INTERGENIC
SBS Chr5 14662910 T-C Hetero INTERGENIC
SBS Chr5 29174376 C-T Hetero INTRON
SBS Chr5 29174377 A-T Hetero INTRON
SBS Chr6 15136596 C-T Hetero INTERGENIC
SBS Chr6 18151422 C-G Hetero INTERGENIC
SBS Chr7 8108876 A-T Hetero INTRON
SBS Chr8 11259700 G-A Homo INTERGENIC
SBS Chr9 1662141 C-T Hetero INTERGENIC
SBS Chr9 8425942 G-A Homo INTERGENIC
SBS Chr9 9668484 C-A Hetero INTERGENIC
SBS Chr9 9866584 T-A Hetero INTERGENIC
SBS Chr10 4634769 T-A Hetero INTERGENIC
SBS Chr10 10603374 A-T Hetero INTERGENIC
SBS Chr10 14605837 G-A Hetero INTERGENIC
SBS Chr10 17565663 T-C Hetero INTERGENIC
SBS Chr11 9858946 C-T Hetero INTERGENIC
SBS Chr11 12793639 T-G Hetero INTERGENIC
SBS Chr11 13863228 T-G Hetero INTERGENIC
SBS Chr11 21054958 T-C Homo INTERGENIC
SBS Chr12 16257184 A-T Hetero INTRON

Deletions: 10

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2236111 2236113 2
Deletion Chr7 4395815 4395818 3 OsKitaake07g055200
Deletion Chr4 4569001 4908000 338999 5
Deletion Chr1 10116955 10116956 1
Deletion Chr2 11682007 11682009 2
Deletion Chr8 12167781 12167797 16
Deletion Chr2 16767698 16767699 1
Deletion Chr5 23643317 23643319 2
Deletion Chr7 27034287 27034288 1 OsKitaake07g252700
Deletion Chr3 35444001 35455000 10999 OsKitaake03g388800

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr5 28150704 28150707 2
Insertion Chr7 25553335 25553340 4
Insertion Chr12 16857059 16857061 1

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr1 7547551 7848490 OsKitaake01g094500
Inversion Chr1 7547558 7848492 OsKitaake01g094500
Inversion Chr7 11907681 12518507

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	7839807	T-C	Hetero	INTRON
SBS	Chr2	28110728	C-T	Hetero	INTRON
SBS	Chr3	34855822	C-G	Hetero	INTERGENIC
SBS	Chr3	37486194	T-C	Hetero	INTERGENIC
SBS	Chr4	7882499	C-T	Hetero	INTERGENIC
SBS	Chr4	8146222	T-C	Hetero	INTERGENIC
SBS	Chr4	16976649	C-A	Hetero	INTERGENIC
SBS	Chr4	28444058	G-A	Hetero	INTERGENIC
SBS	Chr5	3683192	T-A	Homo	INTERGENIC
SBS	Chr5	12620930	G-A	Hetero	INTERGENIC
SBS	Chr5	14662910	T-C	Hetero	INTERGENIC
SBS	Chr5	29174376	C-T	Hetero	INTRON
SBS	Chr5	29174377	A-T	Hetero	INTRON
SBS	Chr6	15136596	C-T	Hetero	INTERGENIC
SBS	Chr6	18151422	C-G	Hetero	INTERGENIC
SBS	Chr7	8108876	A-T	Hetero	INTRON
SBS	Chr8	11259700	G-A	Homo	INTERGENIC
SBS	Chr9	1662141	C-T	Hetero	INTERGENIC
SBS	Chr9	8425942	G-A	Homo	INTERGENIC
SBS	Chr9	9668484	C-A	Hetero	INTERGENIC
SBS	Chr9	9866584	T-A	Hetero	INTERGENIC
SBS	Chr10	4634769	T-A	Hetero	INTERGENIC
SBS	Chr10	10603374	A-T	Hetero	INTERGENIC
SBS	Chr10	14605837	G-A	Hetero	INTERGENIC
SBS	Chr10	17565663	T-C	Hetero	INTERGENIC
SBS	Chr11	9858946	C-T	Hetero	INTERGENIC
SBS	Chr11	12793639	T-G	Hetero	INTERGENIC
SBS	Chr11	13863228	T-G	Hetero	INTERGENIC
SBS	Chr11	21054958	T-C	Homo	INTERGENIC
SBS	Chr12	16257184	A-T	Hetero	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2236111	2236113	2
Deletion	Chr7	4395815	4395818	3	OsKitaake07g055200
Deletion	Chr4	4569001	4908000	338999	5
Deletion	Chr1	10116955	10116956	1
Deletion	Chr2	11682007	11682009	2
Deletion	Chr8	12167781	12167797	16
Deletion	Chr2	16767698	16767699	1
Deletion	Chr5	23643317	23643319	2
Deletion	Chr7	27034287	27034288	1	OsKitaake07g252700
Deletion	Chr3	35444001	35455000	10999	OsKitaake03g388800

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr1	7547551	7848490	OsKitaake01g094500
Inversion	Chr1	7547558	7848492	OsKitaake01g094500
Inversion	Chr7	11907681	12518507

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes