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| Mutant Information |
|---|
| Mutant Name | FN3717-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3717-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 1243917 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 4461162 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g062300 |
| SBS | Chr2 | 19020582 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 29628664 | T-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 33006422 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 6978262 | A-C | Homo | INTERGENIC | |
| SBS | Chr6 | 23778787 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr7 | 3900433 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 10708904 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 11666248 | A-G | Hetero | INTERGENIC | |
| SBS | Chr7 | 19148794 | G-A | Homo | INTERGENIC | |
| SBS | Chr7 | 22612321 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 28154045 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 6745621 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 27103613 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 22411158 | G-A | Homo | INTERGENIC | |
| SBS | Chr10 | 4012118 | G-T | Homo | INTERGENIC | |
| SBS | Chr10 | 15662431 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 17791690 | T-C | Homo | NON_SYNONYMOUS_CODING | OsKitaake10g123100 |
| SBS | Chr11 | 24461542 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 4374837 | C-T | Homo | INTERGENIC | |
| SBS | Chr12 | 12324666 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 26964856 | C-A | Hetero | INTERGENIC |
Deletions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 8020203 | 8020205 | 2 | |
| Deletion | Chr1 | 27960414 | 27960514 | 100 |
Translocations: 1
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 18404259 | Chr5 | 10956661 |