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| Mutant Information |
|---|
| Mutant Name | FN3718-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3718-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 19
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 19910839 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 20143090 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 33115889 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 39478713 | G-T | Homo | INTERGENIC | |
| SBS | Chr2 | 11419642 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 18542568 | T-A | Homo | INTERGENIC | |
| SBS | Chr2 | 31786583 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 32630381 | T-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 33466177 | G-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 16211521 | T-A | Homo | INTERGENIC | |
| SBS | Chr6 | 25325429 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 1314893 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7808692 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr8 | 15622727 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 26031035 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 20917037 | A-C | Homo | UTR_3_PRIME | |
| SBS | Chr11 | 16724098 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 2009707 | G-A | Homo | NON_SYNONYMOUS_CODING | OsKitaake12g031500 |
| SBS | Chr12 | 25533040 | T-C | Hetero | INTERGENIC |
Deletions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr11 | 6308594 | 6308596 | 2 | |
| Deletion | Chr9 | 19170902 | 19170903 | 1 | |
| Deletion | Chr9 | 22288001 | 22350000 | 61999 | 8 |
Insertions: 1
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 5460621 | 5460624 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr5 | 18157827 | 18629697 | |
| Inversion | Chr8 | 18837920 | 18959396 |
Translocations: 5
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr10 | 8614026 | Chr7 | 13904532 | |
| Translocation | Chr5 | 13768810 | Chr2 | 3945609 | OsKitaake02g056600 |
| Translocation | Chr5 | 18629693 | Chr2 | 3946205 | OsKitaake02g056600 |
| Translocation | Chr11 | 19076368 | Chr7 | 25553979 | OsKitaake07g232100 |
| Translocation | Chr11 | 19080453 | Chr7 | 25553976 | OsKitaake07g232100 |