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| Mutant Information |
|---|
| Mutant Name | FN3720-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3720-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 27
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 17302983 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 17690717 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 23968641 | A-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 30261630 | A-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 34671155 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 7473692 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 22361722 | G-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 22361723 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 1992844 | A-G | Homo | INTERGENIC | |
| SBS | Chr4 | 16499224 | C-T | Hetero | INTRON | |
| SBS | Chr4 | 24567820 | G-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 31505191 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 5106151 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 28351810 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 28351811 | A-C | Homo | INTERGENIC | |
| SBS | Chr7 | 1186499 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr7 | 3204628 | G-T | Hetero | INTERGENIC | |
| SBS | Chr7 | 21510005 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 21510006 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 29184051 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 6357495 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 13025779 | C-T | Homo | INTERGENIC | |
| SBS | Chr10 | 9944037 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 13228521 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 16047484 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 27650844 | A-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 24887285 | C-A | Homo | INTRON |
Deletions: 14
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr3 | 4611733 | 4611740 | 7 | |
| Deletion | Chr10 | 5272286 | 5272287 | 1 | |
| Deletion | Chr4 | 8681789 | 8681793 | 4 | |
| Deletion | Chr8 | 8718856 | 8718873 | 17 | |
| Deletion | Chr8 | 13846931 | 13846932 | 1 | OsKitaake08g110801 |
| Deletion | Chr11 | 14925513 | 14925516 | 3 | |
| Deletion | Chr7 | 16210116 | 16210124 | 8 | |
| Deletion | Chr7 | 16559191 | 16559195 | 4 | |
| Deletion | Chr2 | 20070599 | 20070606 | 7 | |
| Deletion | Chr3 | 21008224 | 21008225 | 1 | |
| Deletion | Chr12 | 25363364 | 25363365 | 1 | OsKitaake12g207600 |
| Deletion | Chr12 | 26655719 | 26655732 | 13 | |
| Deletion | Chr3 | 27334458 | 27334464 | 6 | |
| Deletion | Chr1 | 37937731 | 37937733 | 2 |
Insertions: 6
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 27630046 | 27630049 | 2 | |
| Insertion | Chr4 | 14260248 | 14260251 | 2 | |
| Insertion | Chr4 | 16609136 | 16609140 | 3 | |
| Insertion | Chr5 | 23978164 | 23978169 | 4 | |
| Insertion | Chr6 | 12541419 | 12541422 | 2 | |
| Insertion | Chr7 | 10153477 | 10153483 | 5 | OsKitaake07g100000  |