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Mutant Information

Mutant Name	FN3721-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3721-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 27

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1214518 G-A Hetero INTERGENIC
SBS Chr1 7965152 G-A Hetero INTERGENIC
SBS Chr1 29823015 C-G Hetero INTERGENIC
SBS Chr1 30402253 C-T Hetero INTERGENIC
SBS Chr2 3017494 T-G Hetero INTERGENIC
SBS Chr2 30106454 G-C Homo NON_SYNONYMOUS_CODING OsKitaake02g305700
SBS Chr3 4903465 T-A Hetero INTERGENIC
SBS Chr3 8124302 G-T Hetero UTR_3_PRIME
SBS Chr3 35237585 T-A Homo INTERGENIC
SBS Chr4 3515495 G-C Homo INTERGENIC
SBS Chr4 9798254 C-T Homo INTERGENIC
SBS Chr4 11011331 T-C Hetero INTERGENIC
SBS Chr4 13250119 C-G Homo INTERGENIC
SBS Chr5 12242556 C-A Homo INTERGENIC
SBS Chr5 18106603 C-T Homo INTERGENIC
SBS Chr7 3381732 A-T Hetero INTERGENIC
SBS Chr7 9860088 C-T Hetero INTERGENIC
SBS Chr7 16543078 C-A Homo INTERGENIC
SBS Chr7 26229233 A-T Homo INTRON
SBS Chr8 1185007 T-C Hetero INTERGENIC
SBS Chr8 16786138 C-T Hetero INTERGENIC
SBS Chr9 20287519 G-T Hetero INTERGENIC
SBS Chr10 16250099 C-T Hetero INTERGENIC
SBS Chr11 9075167 T-C Homo INTERGENIC
SBS Chr12 8214693 A-G Hetero INTERGENIC
SBS Chr12 15238112 T-C Hetero INTERGENIC
SBS Chr12 22573599 C-T Hetero INTERGENIC

Deletions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr11 3971987 3971989 2
Deletion Chr4 7845016 7845017 1
Deletion Chr5 8237264 8237269 5
Deletion Chr11 9081265 9081266 1
Deletion Chr9 9704412 9704439 27
Deletion Chr8 11559150 11559159 9
Deletion Chr10 16025504 16025507 3
Deletion Chr12 19866206 19866209 3

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 9324976 9324981 4
Insertion Chr5 10666261 10666264 2
Insertion Chr7 24181624 24181627 2

Inversions: 8

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 5141585 5163129 OsKitaake03g073800
Inversion Chr3 5141595 5163136 OsKitaake03g073800
Inversion Chr8 8345312 9324386
Inversion Chr10 8525957 8559380
Inversion Chr10 8525971 8559407
Inversion Chr4 20328623 20373677 OsKitaake04g108750
Inversion Chr3 31667432 31822194
Inversion Chr3 31669853 31822284

Translocations: 1

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 5577053 Chr7 27107996

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1214518	G-A	Hetero	INTERGENIC
SBS	Chr1	7965152	G-A	Hetero	INTERGENIC
SBS	Chr1	29823015	C-G	Hetero	INTERGENIC
SBS	Chr1	30402253	C-T	Hetero	INTERGENIC
SBS	Chr2	3017494	T-G	Hetero	INTERGENIC
SBS	Chr2	30106454	G-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g305700
SBS	Chr3	4903465	T-A	Hetero	INTERGENIC
SBS	Chr3	8124302	G-T	Hetero	UTR_3_PRIME
SBS	Chr3	35237585	T-A	Homo	INTERGENIC
SBS	Chr4	3515495	G-C	Homo	INTERGENIC
SBS	Chr4	9798254	C-T	Homo	INTERGENIC
SBS	Chr4	11011331	T-C	Hetero	INTERGENIC
SBS	Chr4	13250119	C-G	Homo	INTERGENIC
SBS	Chr5	12242556	C-A	Homo	INTERGENIC
SBS	Chr5	18106603	C-T	Homo	INTERGENIC
SBS	Chr7	3381732	A-T	Hetero	INTERGENIC
SBS	Chr7	9860088	C-T	Hetero	INTERGENIC
SBS	Chr7	16543078	C-A	Homo	INTERGENIC
SBS	Chr7	26229233	A-T	Homo	INTRON
SBS	Chr8	1185007	T-C	Hetero	INTERGENIC
SBS	Chr8	16786138	C-T	Hetero	INTERGENIC
SBS	Chr9	20287519	G-T	Hetero	INTERGENIC
SBS	Chr10	16250099	C-T	Hetero	INTERGENIC
SBS	Chr11	9075167	T-C	Homo	INTERGENIC
SBS	Chr12	8214693	A-G	Hetero	INTERGENIC
SBS	Chr12	15238112	T-C	Hetero	INTERGENIC
SBS	Chr12	22573599	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr11	3971987	3971989	2
Deletion	Chr4	7845016	7845017	1
Deletion	Chr5	8237264	8237269	5
Deletion	Chr11	9081265	9081266	1
Deletion	Chr9	9704412	9704439	27
Deletion	Chr8	11559150	11559159	9
Deletion	Chr10	16025504	16025507	3
Deletion	Chr12	19866206	19866209	3

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	5141585	5163129	OsKitaake03g073800
Inversion	Chr3	5141595	5163136	OsKitaake03g073800
Inversion	Chr8	8345312	9324386
Inversion	Chr10	8525957	8559380
Inversion	Chr10	8525971	8559407
Inversion	Chr4	20328623	20373677	OsKitaake04g108750
Inversion	Chr3	31667432	31822194
Inversion	Chr3	31669853	31822284

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes