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| Mutant Information |
|---|
| Mutant Name | FN3722-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3722-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 32
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 7428576 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr1 | 8967438 | G-T | Hetero | INTERGENIC | |
| SBS | Chr2 | 471956 | G-T | Homo | UTR_3_PRIME | |
| SBS | Chr2 | 12255034 | G-A | Homo | INTERGENIC | |
| SBS | Chr3 | 21576922 | T-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 34551067 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 36911768 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 2923142 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 5777352 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 22449802 | G-A | Homo | INTERGENIC | |
| SBS | Chr4 | 32229640 | T-C | Homo | INTRON | |
| SBS | Chr4 | 36260774 | C-G | Hetero | INTRON | |
| SBS | Chr5 | 2765404 | A-C | Hetero | INTRON | |
| SBS | Chr5 | 4932116 | A-G | Hetero | INTRON | |
| SBS | Chr6 | 10239420 | G-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr6 | 14158895 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 24460657 | G-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 11320273 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 15906203 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 21136419 | A-T | Hetero | NON_SYNONYMOUS_CODING | OsKitaake09g182600 |
| SBS | Chr9 | 22647277 | C-G | Homo | INTERGENIC | |
| SBS | Chr10 | 5287463 | G-A | Hetero | INTRON | |
| SBS | Chr10 | 7468588 | G-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 18501774 | C-A | Hetero | INTRON | |
| SBS | Chr11 | 8742007 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 10988746 | G-A | Homo | INTERGENIC | |
| SBS | Chr11 | 11652734 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 15773717 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 16592579 | G-C | Hetero | INTERGENIC | |
| SBS | Chr11 | 28691966 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 12408522 | G-A | Hetero | INTERGENIC | |
| SBS | Chr12 | 21240354 | T-C | Homo | UTR_3_PRIME |
Deletions: 16
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 7254656 | 7254657 | 1 | OsKitaake01g091000 |
| Deletion | Chr10 | 7414551 | 7414557 | 6 | |
| Deletion | Chr7 | 7648744 | 7648750 | 6 | |
| Deletion | Chr5 | 9289653 | 9289656 | 3 | |
| Deletion | Chr9 | 11805192 | 11805196 | 4 | |
| Deletion | Chr8 | 13490222 | 13490229 | 7 | |
| Deletion | Chr5 | 14981321 | 14981343 | 22 | |
| Deletion | Chr9 | 15507361 | 15507363 | 2 | |
| Deletion | Chr3 | 15911242 | 15911244 | 2 | |
| Deletion | Chr11 | 19626110 | 19626118 | 8 | |
| Deletion | Chr10 | 20652597 | 20652598 | 1 | |
| Deletion | Chr9 | 21510001 | 21744000 | 233999 | 40 |
| Deletion | Chr2 | 21552378 | 21552384 | 6 | |
| Deletion | Chr7 | 25799810 | 25799817 | 7 | |
| Deletion | Chr8 | 27246445 | 27246461 | 16 | |
| Deletion | Chr2 | 28785864 | 28785875 | 11 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr4 | 1067347 | 1067349 | 1 | OsKitaake04g008300  |
| Insertion | Chr5 | 21148887 | 21148889 | 1 | |
| Insertion | Chr6 | 29366843 | 29366847 | 3 | |
| Insertion | Chr8 | 3016415 | 3016417 | 1 | |
| Insertion | Chr9 | 9861134 | 9861138 | 3 |
Inversions: 3
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr12 | 10149063 | 10186960 | |
| Inversion | Chr6 | 26582196 | 26830126 | |
| Inversion | Chr6 | 26582199 | 26834800 |