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Mutant Information

Mutant Name	FN3723-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3723-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 53

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13448328 T-A Hetero INTRON
SBS Chr1 13448329 T-A Hetero INTRON
SBS Chr1 15316634 A-G Hetero INTRON
SBS Chr1 16671404 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake01g177400
SBS Chr1 17091081 G-A Hetero INTERGENIC
SBS Chr1 18166006 T-G Hetero INTERGENIC
SBS Chr1 18198338 G-T Homo INTERGENIC
SBS Chr1 20675625 C-T Homo UTR_3_PRIME
SBS Chr1 40943477 A-G Hetero INTERGENIC
SBS Chr2 90930 C-T Homo INTERGENIC
SBS Chr2 5710890 G-A Hetero INTRON
SBS Chr2 9437107 C-T Homo INTERGENIC
SBS Chr2 23283008 T-A Hetero INTERGENIC
SBS Chr2 31479909 G-A Hetero INTERGENIC
SBS Chr2 32060349 G-A Hetero INTERGENIC
SBS Chr2 33994056 C-T Homo INTERGENIC
SBS Chr2 36783780 T-G Hetero UTR_5_PRIME
SBS Chr2 37082739 C-T Hetero INTERGENIC
SBS Chr3 7760208 C-A Homo INTRON
SBS Chr3 19522252 C-T Hetero INTERGENIC
SBS Chr3 23218282 G-A Hetero INTRON
SBS Chr3 23727221 G-T Hetero INTRON
SBS Chr3 23942767 C-T Hetero INTERGENIC
SBS Chr3 24100518 A-G Hetero INTERGENIC
SBS Chr3 26706524 A-T Homo INTERGENIC
SBS Chr3 33102178 T-A Hetero INTERGENIC
SBS Chr3 37471348 G-A Hetero INTRON
SBS Chr4 5804568 C-A Hetero INTERGENIC
SBS Chr4 10187429 A-G Hetero INTERGENIC
SBS Chr4 29806503 A-C Hetero INTERGENIC
SBS Chr5 3674750 G-A Hetero INTERGENIC
SBS Chr5 5083575 A-T Hetero INTERGENIC
SBS Chr5 16780157 A-C Homo INTERGENIC
SBS Chr5 16780159 A-G Homo INTERGENIC
SBS Chr6 4447870 C-T Homo UTR_3_PRIME
SBS Chr6 4447871 C-T Homo UTR_3_PRIME
SBS Chr6 10698733 A-G Hetero INTERGENIC
SBS Chr6 16565062 A-T Homo INTERGENIC
SBS Chr7 24064853 G-A Homo SYNONYMOUS_CODING
SBS Chr9 5399641 G-T Homo INTRON
SBS Chr9 7400739 G-C Hetero INTRON
SBS Chr9 16581694 T-C Hetero UTR_3_PRIME
SBS Chr9 16965264 C-T Homo INTERGENIC
SBS Chr10 11625274 G-A Hetero INTERGENIC
SBS Chr10 11785460 T-C Hetero INTERGENIC
SBS Chr10 14012500 A-G Hetero UTR_5_PRIME
SBS Chr11 9595659 A-T Homo INTERGENIC
SBS Chr11 10812417 A-T Homo INTERGENIC
SBS Chr11 11796137 G-A Homo INTERGENIC
SBS Chr11 24337151 C-A Hetero INTERGENIC
SBS Chr11 26915035 A-G Hetero INTERGENIC
SBS Chr12 10712706 C-T Hetero INTERGENIC
SBS Chr12 14670696 T-A Hetero INTERGENIC

Deletions: 15

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 739126 739127 1
Deletion Chr3 801695 801699 4 OsKitaake03g012500
Deletion Chr11 1884752 1884753 1
Deletion Chr7 3343151 3343162 11
Deletion Chr9 9212441 9212451 10
Deletion Chr3 11039217 11039218 1
Deletion Chr7 14600233 14600236 3
Deletion Chr7 15262798 15262800 2
Deletion Chr5 16407653 16407657 4
Deletion Chr11 17074590 17074593 3 OsKitaake11g133400
Deletion Chr4 19502001 19506000 3999
Deletion Chr2 24335711 24335720 9
Deletion Chr4 29404795 29404797 2 OsKitaake04g224700
Deletion Chr4 34254282 34254283 1
Deletion Chr3 35838508 35838509 1

Insertions: 3

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 28795618 28795620 1
Insertion Chr7 5616591 5616595 3
Insertion Chr9 15121259 15121262 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 18707789 19501913
Inversion Chr4 18707794 19505984
Inversion Chr9 19432131 19446571 OsKitaake09g158400

Translocations: 4

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 7425041 Chr4 19475076
Translocation Chr12 7425048 Chr4 19589658
Translocation Chr4 34910757 Chr2 21602872
Translocation Chr4 34910792 Chr2 21602384

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13448328	T-A	Hetero	INTRON
SBS	Chr1	13448329	T-A	Hetero	INTRON
SBS	Chr1	15316634	A-G	Hetero	INTRON
SBS	Chr1	16671404	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g177400
SBS	Chr1	17091081	G-A	Hetero	INTERGENIC
SBS	Chr1	18166006	T-G	Hetero	INTERGENIC
SBS	Chr1	18198338	G-T	Homo	INTERGENIC
SBS	Chr1	20675625	C-T	Homo	UTR_3_PRIME
SBS	Chr1	40943477	A-G	Hetero	INTERGENIC
SBS	Chr2	90930	C-T	Homo	INTERGENIC
SBS	Chr2	5710890	G-A	Hetero	INTRON
SBS	Chr2	9437107	C-T	Homo	INTERGENIC
SBS	Chr2	23283008	T-A	Hetero	INTERGENIC
SBS	Chr2	31479909	G-A	Hetero	INTERGENIC
SBS	Chr2	32060349	G-A	Hetero	INTERGENIC
SBS	Chr2	33994056	C-T	Homo	INTERGENIC
SBS	Chr2	36783780	T-G	Hetero	UTR_5_PRIME
SBS	Chr2	37082739	C-T	Hetero	INTERGENIC
SBS	Chr3	7760208	C-A	Homo	INTRON
SBS	Chr3	19522252	C-T	Hetero	INTERGENIC
SBS	Chr3	23218282	G-A	Hetero	INTRON
SBS	Chr3	23727221	G-T	Hetero	INTRON
SBS	Chr3	23942767	C-T	Hetero	INTERGENIC
SBS	Chr3	24100518	A-G	Hetero	INTERGENIC
SBS	Chr3	26706524	A-T	Homo	INTERGENIC
SBS	Chr3	33102178	T-A	Hetero	INTERGENIC
SBS	Chr3	37471348	G-A	Hetero	INTRON
SBS	Chr4	5804568	C-A	Hetero	INTERGENIC
SBS	Chr4	10187429	A-G	Hetero	INTERGENIC
SBS	Chr4	29806503	A-C	Hetero	INTERGENIC
SBS	Chr5	3674750	G-A	Hetero	INTERGENIC
SBS	Chr5	5083575	A-T	Hetero	INTERGENIC
SBS	Chr5	16780157	A-C	Homo	INTERGENIC
SBS	Chr5	16780159	A-G	Homo	INTERGENIC
SBS	Chr6	4447870	C-T	Homo	UTR_3_PRIME
SBS	Chr6	4447871	C-T	Homo	UTR_3_PRIME
SBS	Chr6	10698733	A-G	Hetero	INTERGENIC
SBS	Chr6	16565062	A-T	Homo	INTERGENIC
SBS	Chr7	24064853	G-A	Homo	SYNONYMOUS_CODING
SBS	Chr9	5399641	G-T	Homo	INTRON
SBS	Chr9	7400739	G-C	Hetero	INTRON
SBS	Chr9	16581694	T-C	Hetero	UTR_3_PRIME
SBS	Chr9	16965264	C-T	Homo	INTERGENIC
SBS	Chr10	11625274	G-A	Hetero	INTERGENIC
SBS	Chr10	11785460	T-C	Hetero	INTERGENIC
SBS	Chr10	14012500	A-G	Hetero	UTR_5_PRIME
SBS	Chr11	9595659	A-T	Homo	INTERGENIC
SBS	Chr11	10812417	A-T	Homo	INTERGENIC
SBS	Chr11	11796137	G-A	Homo	INTERGENIC
SBS	Chr11	24337151	C-A	Hetero	INTERGENIC
SBS	Chr11	26915035	A-G	Hetero	INTERGENIC
SBS	Chr12	10712706	C-T	Hetero	INTERGENIC
SBS	Chr12	14670696	T-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	739126	739127	1
Deletion	Chr3	801695	801699	4	OsKitaake03g012500
Deletion	Chr11	1884752	1884753	1
Deletion	Chr7	3343151	3343162	11
Deletion	Chr9	9212441	9212451	10
Deletion	Chr3	11039217	11039218	1
Deletion	Chr7	14600233	14600236	3
Deletion	Chr7	15262798	15262800	2
Deletion	Chr5	16407653	16407657	4
Deletion	Chr11	17074590	17074593	3	OsKitaake11g133400
Deletion	Chr4	19502001	19506000	3999
Deletion	Chr2	24335711	24335720	9
Deletion	Chr4	29404795	29404797	2	OsKitaake04g224700
Deletion	Chr4	34254282	34254283	1
Deletion	Chr3	35838508	35838509	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	18707789	19501913
Inversion	Chr4	18707794	19505984
Inversion	Chr9	19432131	19446571	OsKitaake09g158400

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes