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Mutant Information

Mutant Name	FN3725-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3725-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 43

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3187713 C-T Hetero INTERGENIC
SBS Chr1 10740849 A-T Hetero INTERGENIC
SBS Chr1 22865857 A-C Hetero INTERGENIC
SBS Chr1 32743058 C-T Homo INTERGENIC
SBS Chr1 34999512 C-T Homo SYNONYMOUS_CODING
SBS Chr1 42837311 T-G Hetero INTERGENIC
SBS Chr1 43632330 T-C Hetero INTERGENIC
SBS Chr2 9503795 T-A Hetero INTERGENIC
SBS Chr2 12643704 C-T Hetero INTERGENIC
SBS Chr2 12643709 A-T Hetero INTERGENIC
SBS Chr2 12643711 A-T Hetero INTERGENIC
SBS Chr2 17732770 C-T Hetero INTERGENIC
SBS Chr3 3184209 A-T Homo INTERGENIC
SBS Chr3 6679633 G-A Homo INTERGENIC
SBS Chr3 10466801 C-T Hetero INTERGENIC
SBS Chr3 21004092 T-A Hetero INTERGENIC
SBS Chr3 25065704 C-T Hetero INTERGENIC
SBS Chr3 25691637 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake03g270900
SBS Chr3 27315935 C-G Hetero NON_SYNONYMOUS_CODING OsKitaake03g281300
SBS Chr4 25862273 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake04g180800
SBS Chr4 31179170 G-A Hetero UTR_3_PRIME
SBS Chr4 31179172 A-G Hetero UTR_3_PRIME
SBS Chr4 32213898 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g256300
SBS Chr4 32213899 C-A Hetero SYNONYMOUS_CODING
SBS Chr5 4862802 G-A Hetero INTERGENIC
SBS Chr5 13229565 G-A Hetero INTERGENIC
SBS Chr5 13229566 C-A Hetero INTERGENIC
SBS Chr5 17127368 C-T Hetero INTERGENIC
SBS Chr6 15282233 G-A Hetero INTERGENIC
SBS Chr6 16756220 G-A Hetero INTERGENIC
SBS Chr7 1465977 G-C Homo INTERGENIC
SBS Chr7 9005283 G-T Hetero INTERGENIC
SBS Chr7 19992043 T-G Hetero INTERGENIC
SBS Chr8 2055490 G-T Hetero INTERGENIC
SBS Chr8 5651415 C-A Hetero INTERGENIC
SBS Chr10 3303812 G-A Hetero INTERGENIC
SBS Chr10 5825786 T-C Hetero INTERGENIC
SBS Chr10 8375046 C-T Hetero INTRON
SBS Chr10 21900605 C-T Homo INTERGENIC
SBS Chr11 15345810 C-T Hetero INTERGENIC
SBS Chr11 25303629 G-C Hetero INTERGENIC
SBS Chr12 5184917 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g065600
SBS Chr12 18828835 T-C Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 3531922 3531924 2
Deletion Chr11 5018873 5018885 12
Deletion Chr4 7623731 7623738 7
Deletion Chr4 10247183 10247187 4
Deletion Chr6 17659001 17887000 227999 14
Deletion Chr6 19794994 19794997 3 OsKitaake06g177900
Deletion Chr3 25584053 25584061 8
Deletion Chr8 26795585 26795589 4
Deletion Chr3 27316066 27316079 13 OsKitaake03g281300

Insertions: 8

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr2 8493493 8493496 2
Insertion Chr4 9570617 9570619 1
Insertion Chr4 12574045 12574049 3
Insertion Chr7 4721823 4721826 2
Insertion Chr7 28157969 28157971 1
Insertion Chr8 8947758 8947761 2
Insertion Chr9 14509920 14509923 2
Insertion Chr9 22665767 22665770 2

Inversions: 4

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 6832674 6878292
Inversion Chr4 6832677 6878291
Inversion Chr6 17354027 17888117
Inversion Chr1 22730310 22804576

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr5 4229473 Chr4 33650256 OsKitaake04g278800
Translocation Chr5 4233429 Chr4 33650242 2
Translocation Chr4 6012178 Chr3 8570504 2
Translocation Chr4 6012491 Chr3 8570503 2
Translocation Chr6 17354009 Chr5 4253410
Translocation Chr10 22318519 Chr7 19647374

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3187713	C-T	Hetero	INTERGENIC
SBS	Chr1	10740849	A-T	Hetero	INTERGENIC
SBS	Chr1	22865857	A-C	Hetero	INTERGENIC
SBS	Chr1	32743058	C-T	Homo	INTERGENIC
SBS	Chr1	34999512	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr1	42837311	T-G	Hetero	INTERGENIC
SBS	Chr1	43632330	T-C	Hetero	INTERGENIC
SBS	Chr2	9503795	T-A	Hetero	INTERGENIC
SBS	Chr2	12643704	C-T	Hetero	INTERGENIC
SBS	Chr2	12643709	A-T	Hetero	INTERGENIC
SBS	Chr2	12643711	A-T	Hetero	INTERGENIC
SBS	Chr2	17732770	C-T	Hetero	INTERGENIC
SBS	Chr3	3184209	A-T	Homo	INTERGENIC
SBS	Chr3	6679633	G-A	Homo	INTERGENIC
SBS	Chr3	10466801	C-T	Hetero	INTERGENIC
SBS	Chr3	21004092	T-A	Hetero	INTERGENIC
SBS	Chr3	25065704	C-T	Hetero	INTERGENIC
SBS	Chr3	25691637	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g270900
SBS	Chr3	27315935	C-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g281300
SBS	Chr4	25862273	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g180800
SBS	Chr4	31179170	G-A	Hetero	UTR_3_PRIME
SBS	Chr4	31179172	A-G	Hetero	UTR_3_PRIME
SBS	Chr4	32213898	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g256300
SBS	Chr4	32213899	C-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	4862802	G-A	Hetero	INTERGENIC
SBS	Chr5	13229565	G-A	Hetero	INTERGENIC
SBS	Chr5	13229566	C-A	Hetero	INTERGENIC
SBS	Chr5	17127368	C-T	Hetero	INTERGENIC
SBS	Chr6	15282233	G-A	Hetero	INTERGENIC
SBS	Chr6	16756220	G-A	Hetero	INTERGENIC
SBS	Chr7	1465977	G-C	Homo	INTERGENIC
SBS	Chr7	9005283	G-T	Hetero	INTERGENIC
SBS	Chr7	19992043	T-G	Hetero	INTERGENIC
SBS	Chr8	2055490	G-T	Hetero	INTERGENIC
SBS	Chr8	5651415	C-A	Hetero	INTERGENIC
SBS	Chr10	3303812	G-A	Hetero	INTERGENIC
SBS	Chr10	5825786	T-C	Hetero	INTERGENIC
SBS	Chr10	8375046	C-T	Hetero	INTRON
SBS	Chr10	21900605	C-T	Homo	INTERGENIC
SBS	Chr11	15345810	C-T	Hetero	INTERGENIC
SBS	Chr11	25303629	G-C	Hetero	INTERGENIC
SBS	Chr12	5184917	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g065600
SBS	Chr12	18828835	T-C	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	3531922	3531924	2
Deletion	Chr11	5018873	5018885	12
Deletion	Chr4	7623731	7623738	7
Deletion	Chr4	10247183	10247187	4
Deletion	Chr6	17659001	17887000	227999	14
Deletion	Chr6	19794994	19794997	3	OsKitaake06g177900
Deletion	Chr3	25584053	25584061	8
Deletion	Chr8	26795585	26795589	4
Deletion	Chr3	27316066	27316079	13	OsKitaake03g281300

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	6832674	6878292
Inversion	Chr4	6832677	6878291
Inversion	Chr6	17354027	17888117
Inversion	Chr1	22730310	22804576

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes