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| Mutant Information |
|---|
| Mutant Name | FN3727-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3727-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 26
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 17452720 | G-A | Homo | INTERGENIC | |
| SBS | Chr2 | 16801590 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 24905766 | G-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 26698533 | A-G | Homo | INTERGENIC | |
| SBS | Chr3 | 19684177 | G-C | Hetero | INTERGENIC | |
| SBS | Chr3 | 35810278 | A-G | Hetero | INTRON | |
| SBS | Chr4 | 28215960 | T-C | Hetero | INTERGENIC | |
| SBS | Chr4 | 33090375 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 2362523 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 13784454 | T-C | Hetero | INTERGENIC | |
| SBS | Chr6 | 13830995 | A-G | Hetero | INTERGENIC | |
| SBS | Chr6 | 16965949 | T-A | Hetero | INTRON | |
| SBS | Chr6 | 20798465 | T-C | Hetero | INTRON | |
| SBS | Chr7 | 135522 | T-G | Homo | INTERGENIC | |
| SBS | Chr7 | 10592789 | A-G | Homo | INTERGENIC | |
| SBS | Chr8 | 10820042 | C-T | Homo | INTERGENIC | |
| SBS | Chr8 | 13779026 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 18108824 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 1493298 | A-T | Homo | INTERGENIC | |
| SBS | Chr10 | 6867879 | G-C | Homo | INTERGENIC | |
| SBS | Chr10 | 9473106 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 10056250 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 21769760 | G-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 25044976 | C-G | Hetero | UTR_5_PRIME | |
| SBS | Chr12 | 14857666 | T-A | Homo | INTERGENIC | |
| SBS | Chr12 | 21354684 | T-A | Homo | INTERGENIC |
Deletions: 12
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 646519 | 646521 | 2 | |
| Deletion | Chr5 | 2158478 | 2158482 | 4 | |
| Deletion | Chr6 | 3204493 | 3204494 | 1 | |
| Deletion | Chr11 | 12456290 | 12456291 | 1 | |
| Deletion | Chr10 | 13718723 | 13718724 | 1 | |
| Deletion | Chr5 | 16570001 | 16593000 | 22999 | 2 |
| Deletion | Chr2 | 17806001 | 18117000 | 310999 | 19 |
| Deletion | Chr6 | 17964052 | 17964053 | 1 | |
| Deletion | Chr6 | 20794321 | 20794332 | 11 | |
| Deletion | Chr2 | 21487686 | 21487687 | 1 | |
| Deletion | Chr5 | 24281003 | 24281012 | 9 | |
| Deletion | Chr1 | 33665797 | 33665800 | 3 | OsKitaake01g345200 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 36424500 | 36424505 | 4 | |
| Insertion | Chr12 | 10422225 | 10422228 | 2 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr5 | 16591486 | Chr4 | 20806295 | |
| Translocation | Chr5 | 16592679 | Chr4 | 20806297 | |
| Translocation | Chr10 | 19135230 | Chr2 | 27424759 | OsKitaake10g137800 |
| Translocation | Chr10 | 19137164 | Chr2 | 27424757 | OsKitaake10g137800 |