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| Mutant Information |
|---|
| Mutant Name | FN3728-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3728-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 22
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 6764222 | G-A | Homo | INTRON | |
| SBS | Chr1 | 14741965 | C-T | Homo | INTERGENIC | |
| SBS | Chr1 | 16488758 | T-G | Homo | INTERGENIC | |
| SBS | Chr1 | 43275426 | C-T | Homo | INTERGENIC | |
| SBS | Chr2 | 24838411 | C-A | Hetero | INTERGENIC | |
| SBS | Chr2 | 26634567 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake02g266300 |
| SBS | Chr2 | 34815564 | T-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 3062666 | C-A | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr3 | 23146494 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 34260402 | T-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake03g370700 |
| SBS | Chr4 | 4182228 | T-G | Homo | INTERGENIC | |
| SBS | Chr4 | 23529149 | C-T | Homo | SYNONYMOUS_CODING | |
| SBS | Chr5 | 4767922 | G-A | Hetero | INTERGENIC | |
| SBS | Chr5 | 7051026 | A-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 20877313 | C-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 2542449 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 9377389 | C-G | Homo | INTERGENIC | |
| SBS | Chr7 | 17062215 | A-T | Homo | INTERGENIC | |
| SBS | Chr7 | 19440243 | T-C | Hetero | INTERGENIC | |
| SBS | Chr9 | 19621572 | C-T | Hetero | INTRON | |
| SBS | Chr11 | 3542419 | A-G | Homo | INTRON | |
| SBS | Chr12 | 21295135 | C-T | Homo | INTERGENIC |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr1 | 617421 | 617422 | 1 | OsKitaake01g113900 |
| Deletion | Chr4 | 4517812 | 4517820 | 8 | |
| Deletion | Chr12 | 16030715 | 16030720 | 5 | |
| Deletion | Chr9 | 18681437 | 18681440 | 3 | |
| Deletion | Chr9 | 18758137 | 18758153 | 16 | |
| Deletion | Chr10 | 19145495 | 19145496 | 1 | |
| Deletion | Chr4 | 23749849 | 23749858 | 9 | |
| Deletion | Chr12 | 24584127 | 24584142 | 15 | |
| Deletion | Chr3 | 25395684 | 25395685 | 1 | |
| Deletion | Chr7 | 29531001 | 29600000 | 68999 | 8 |
Insertions: 3
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 16958351 | 16958354 | 2 | |
| Insertion | Chr2 | 36277420 | 36277422 | 1 | OsKitaake02g383700  |
| Insertion | Chr11 | 21343666 | 21343668 | 1 |
Inversions: 1
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr2 | 26636485 | 27098389 | OsKitaake02g270500 |
Translocations: 4
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr6 | 2178450 | Chr2 | 26575308 | 2 |
| Translocation | Chr6 | 2179085 | Chr2 | 27098401 | 2 |
| Translocation | Chr11 | 3534706 | Chr6 | 15585107 | OsKitaake11g049300 |
| Translocation | Chr6 | 15585107 | Chr1 | 32614588 |