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Mutant Information

Mutant Name	FN3729-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3729-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 50

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 498820 C-T Homo INTERGENIC
SBS Chr1 1515552 A-G Hetero INTERGENIC
SBS Chr1 15129604 A-G Hetero INTERGENIC
SBS Chr1 15576521 G-A Hetero INTERGENIC
SBS Chr2 6570342 T-G Hetero INTERGENIC
SBS Chr2 6570597 G-T Hetero INTERGENIC
SBS Chr2 6572142 A-T Hetero STOP_GAINED OsKitaake02g089301
SBS Chr2 10633385 C-T Hetero INTERGENIC
SBS Chr2 20655608 G-A Hetero INTERGENIC
SBS Chr2 32986344 C-T Hetero INTERGENIC
SBS Chr2 33766289 C-T Hetero INTERGENIC
SBS Chr3 10144531 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g138900
SBS Chr3 19268380 C-A Hetero INTERGENIC
SBS Chr3 19886385 C-T Homo INTERGENIC
SBS Chr3 29311439 C-T Hetero INTERGENIC
SBS Chr3 30619490 C-A Hetero INTERGENIC
SBS Chr4 2151949 G-T Hetero INTERGENIC
SBS Chr4 3279280 C-T Hetero SPLICE_SITE_REGION
SBS Chr4 4934886 G-A Hetero INTERGENIC
SBS Chr4 6959294 C-T Hetero INTERGENIC
SBS Chr4 11620544 G-A Hetero INTERGENIC
SBS Chr4 13595077 A-G Hetero INTERGENIC
SBS Chr4 23883375 G-A Hetero INTERGENIC
SBS Chr5 14228772 G-T Homo INTERGENIC
SBS Chr6 1745097 T-C Hetero INTERGENIC
SBS Chr6 2663243 C-T Hetero INTERGENIC
SBS Chr6 20854699 G-A Hetero INTERGENIC
SBS Chr7 536976 C-T Hetero INTERGENIC
SBS Chr7 4811701 C-T Hetero INTRON
SBS Chr7 8004344 C-T Hetero INTERGENIC
SBS Chr7 8665181 A-G Hetero INTERGENIC
SBS Chr7 10235527 C-T Homo INTERGENIC
SBS Chr8 1321933 C-T Hetero INTERGENIC
SBS Chr8 6615299 T-C Homo INTERGENIC
SBS Chr8 20819275 G-A Hetero INTRON
SBS Chr9 10326614 C-T Homo INTERGENIC
SBS Chr9 10489499 T-C Homo INTERGENIC
SBS Chr9 20822644 C-T Homo INTERGENIC
SBS Chr9 21671616 A-G Homo INTERGENIC
SBS Chr10 12214249 C-T Hetero INTERGENIC
SBS Chr11 4478549 C-A Hetero INTERGENIC
SBS Chr11 7066343 G-T Hetero INTERGENIC
SBS Chr11 11780951 C-T Hetero INTERGENIC
SBS Chr11 17738695 T-C Homo INTERGENIC
SBS Chr11 26090173 C-T Hetero INTERGENIC
SBS Chr11 27393594 G-A Homo INTERGENIC
SBS Chr11 28616413 T-A Hetero INTRON
SBS Chr12 1981510 C-T Homo INTERGENIC
SBS Chr12 2474825 T-A Homo INTRON
SBS Chr12 10436416 C-T Hetero INTERGENIC

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 2187001 2206000 18999 2
Deletion Chr9 3065712 3065714 2
Deletion Chr2 4139430 4139437 7
Deletion Chr6 5021001 5032000 10999
Deletion Chr9 7794946 7794958 12
Deletion Chr1 10456278 10456281 3
Deletion Chr1 10648643 10648645 2
Deletion Chr11 10867001 10884000 16999 OsKitaake11g105800
Deletion Chr1 13074841 13074842 1 OsKitaake01g155100
Deletion Chr4 13171382 13171383 1
Deletion Chr10 13218053 13218059 6
Deletion Chr6 13236390 13236392 2
Deletion Chr8 14122001 14185000 62999 10
Deletion Chr1 16623956 16623963 7
Deletion Chr10 19018105 19018113 8
Deletion Chr8 21087960 21087970 10 OsKitaake08g158400
Deletion Chr1 23773358 23773360 2 OsKitaake01g228000
Deletion Chr3 25738267 25738282 15
Deletion Chr4 28250033 28250040 7
Deletion Chr1 38926001 39005000 78999 9
Deletion Chr1 41331272 41331273 1
Deletion Chr1 41635545 41635546 1
Deletion Chr1 41658001 41727000 68999 10

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr6 1344386 1344389 2
Insertion Chr6 7853292 7853296 3
Insertion Chr7 22756 22759 2
Insertion Chr7 20058039 20058042 2
Insertion Chr11 28449198 28449201 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	498820	C-T	Homo	INTERGENIC
SBS	Chr1	1515552	A-G	Hetero	INTERGENIC
SBS	Chr1	15129604	A-G	Hetero	INTERGENIC
SBS	Chr1	15576521	G-A	Hetero	INTERGENIC
SBS	Chr2	6570342	T-G	Hetero	INTERGENIC
SBS	Chr2	6570597	G-T	Hetero	INTERGENIC
SBS	Chr2	6572142	A-T	Hetero	STOP_GAINED	OsKitaake02g089301
SBS	Chr2	10633385	C-T	Hetero	INTERGENIC
SBS	Chr2	20655608	G-A	Hetero	INTERGENIC
SBS	Chr2	32986344	C-T	Hetero	INTERGENIC
SBS	Chr2	33766289	C-T	Hetero	INTERGENIC
SBS	Chr3	10144531	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g138900
SBS	Chr3	19268380	C-A	Hetero	INTERGENIC
SBS	Chr3	19886385	C-T	Homo	INTERGENIC
SBS	Chr3	29311439	C-T	Hetero	INTERGENIC
SBS	Chr3	30619490	C-A	Hetero	INTERGENIC
SBS	Chr4	2151949	G-T	Hetero	INTERGENIC
SBS	Chr4	3279280	C-T	Hetero	SPLICE_SITE_REGION
SBS	Chr4	4934886	G-A	Hetero	INTERGENIC
SBS	Chr4	6959294	C-T	Hetero	INTERGENIC
SBS	Chr4	11620544	G-A	Hetero	INTERGENIC
SBS	Chr4	13595077	A-G	Hetero	INTERGENIC
SBS	Chr4	23883375	G-A	Hetero	INTERGENIC
SBS	Chr5	14228772	G-T	Homo	INTERGENIC
SBS	Chr6	1745097	T-C	Hetero	INTERGENIC
SBS	Chr6	2663243	C-T	Hetero	INTERGENIC
SBS	Chr6	20854699	G-A	Hetero	INTERGENIC
SBS	Chr7	536976	C-T	Hetero	INTERGENIC
SBS	Chr7	4811701	C-T	Hetero	INTRON
SBS	Chr7	8004344	C-T	Hetero	INTERGENIC
SBS	Chr7	8665181	A-G	Hetero	INTERGENIC
SBS	Chr7	10235527	C-T	Homo	INTERGENIC
SBS	Chr8	1321933	C-T	Hetero	INTERGENIC
SBS	Chr8	6615299	T-C	Homo	INTERGENIC
SBS	Chr8	20819275	G-A	Hetero	INTRON
SBS	Chr9	10326614	C-T	Homo	INTERGENIC
SBS	Chr9	10489499	T-C	Homo	INTERGENIC
SBS	Chr9	20822644	C-T	Homo	INTERGENIC
SBS	Chr9	21671616	A-G	Homo	INTERGENIC
SBS	Chr10	12214249	C-T	Hetero	INTERGENIC
SBS	Chr11	4478549	C-A	Hetero	INTERGENIC
SBS	Chr11	7066343	G-T	Hetero	INTERGENIC
SBS	Chr11	11780951	C-T	Hetero	INTERGENIC
SBS	Chr11	17738695	T-C	Homo	INTERGENIC
SBS	Chr11	26090173	C-T	Hetero	INTERGENIC
SBS	Chr11	27393594	G-A	Homo	INTERGENIC
SBS	Chr11	28616413	T-A	Hetero	INTRON
SBS	Chr12	1981510	C-T	Homo	INTERGENIC
SBS	Chr12	2474825	T-A	Homo	INTRON
SBS	Chr12	10436416	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	2187001	2206000	18999	2
Deletion	Chr9	3065712	3065714	2
Deletion	Chr2	4139430	4139437	7
Deletion	Chr6	5021001	5032000	10999
Deletion	Chr9	7794946	7794958	12
Deletion	Chr1	10456278	10456281	3
Deletion	Chr1	10648643	10648645	2
Deletion	Chr11	10867001	10884000	16999	OsKitaake11g105800
Deletion	Chr1	13074841	13074842	1	OsKitaake01g155100
Deletion	Chr4	13171382	13171383	1
Deletion	Chr10	13218053	13218059	6
Deletion	Chr6	13236390	13236392	2
Deletion	Chr8	14122001	14185000	62999	10
Deletion	Chr1	16623956	16623963	7
Deletion	Chr10	19018105	19018113	8
Deletion	Chr8	21087960	21087970	10	OsKitaake08g158400
Deletion	Chr1	23773358	23773360	2	OsKitaake01g228000
Deletion	Chr3	25738267	25738282	15
Deletion	Chr4	28250033	28250040	7
Deletion	Chr1	38926001	39005000	78999	9
Deletion	Chr1	41331272	41331273	1
Deletion	Chr1	41635545	41635546	1
Deletion	Chr1	41658001	41727000	68999	10

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes