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Mutant Information

Mutant Name	FN373-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN373-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3668682 C-T Homo INTRON
SBS Chr1 4181145 T-C Homo INTRON
SBS Chr1 10545642 G-A Hetero INTERGENIC
SBS Chr1 11415380 A-G Hetero INTERGENIC
SBS Chr1 35842351 T-C Hetero NON_SYNONYMOUS_CODING OsKitaake01g379900
SBS Chr2 2783189 T-G Hetero INTERGENIC
SBS Chr2 3501849 C-T Hetero INTERGENIC
SBS Chr2 11233014 G-A Homo INTERGENIC
SBS Chr2 12904816 C-T Homo INTERGENIC
SBS Chr2 22206366 A-G Homo INTRON
SBS Chr2 31255982 C-T Homo NON_SYNONYMOUS_CODING OsKitaake02g320300
SBS Chr4 10332848 G-A Homo INTERGENIC
SBS Chr4 11005013 T-C Homo INTERGENIC
SBS Chr4 23762201 A-T Homo INTRON
SBS Chr4 34265394 G-A Hetero INTERGENIC
SBS Chr5 917057 G-A Hetero INTERGENIC
SBS Chr5 11498179 T-C Hetero INTERGENIC
SBS Chr5 14060439 C-T Hetero INTERGENIC
SBS Chr6 3942283 G-A Hetero INTRON
SBS Chr6 6330033 A-G Hetero INTERGENIC
SBS Chr6 7550924 C-T Hetero INTERGENIC
SBS Chr6 29368146 A-T Homo INTRON
SBS Chr7 22596733 A-G Hetero INTERGENIC
SBS Chr7 26715075 G-A Homo INTRON
SBS Chr8 16369768 T-A Hetero INTERGENIC
SBS Chr9 5310210 A-T Hetero INTERGENIC
SBS Chr9 13765810 G-A Homo INTERGENIC
SBS Chr9 16773955 T-C Homo INTERGENIC
SBS Chr10 2182936 A-G Hetero INTERGENIC
SBS Chr10 14033226 C-A Hetero INTRON
SBS Chr10 14132796 T-C Hetero UTR_3_PRIME
SBS Chr11 22505242 G-A Homo INTERGENIC
SBS Chr11 27477188 C-T Homo INTERGENIC
SBS Chr12 25542266 G-A Homo INTERGENIC

Deletions: 11

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 4419470 4419477 7
Deletion Chr8 7906948 7906951 3
Deletion Chr2 10036091 10036094 3
Deletion Chr4 10248875 10248876 1
Deletion Chr6 12530377 12530380 3
Deletion Chr2 13094657 13094730 73
Deletion Chr7 16687712 16687713 1
Deletion Chr8 18606123 18606126 3
Deletion Chr12 21883740 21883751 11
Deletion Chr4 28497035 28497037 2
Deletion Chr4 34516563 34516568 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr12 17566882 17566887 4
Insertion Chr3 8671974 8671978 3

Translocations: 2

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 3042784 Chr2 35416895
Translocation Chr10 3047490 Chr2 35416908

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3668682	C-T	Homo	INTRON
SBS	Chr1	4181145	T-C	Homo	INTRON
SBS	Chr1	10545642	G-A	Hetero	INTERGENIC
SBS	Chr1	11415380	A-G	Hetero	INTERGENIC
SBS	Chr1	35842351	T-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake01g379900
SBS	Chr2	2783189	T-G	Hetero	INTERGENIC
SBS	Chr2	3501849	C-T	Hetero	INTERGENIC
SBS	Chr2	11233014	G-A	Homo	INTERGENIC
SBS	Chr2	12904816	C-T	Homo	INTERGENIC
SBS	Chr2	22206366	A-G	Homo	INTRON
SBS	Chr2	31255982	C-T	Homo	NON_SYNONYMOUS_CODING	OsKitaake02g320300
SBS	Chr4	10332848	G-A	Homo	INTERGENIC
SBS	Chr4	11005013	T-C	Homo	INTERGENIC
SBS	Chr4	23762201	A-T	Homo	INTRON
SBS	Chr4	34265394	G-A	Hetero	INTERGENIC
SBS	Chr5	917057	G-A	Hetero	INTERGENIC
SBS	Chr5	11498179	T-C	Hetero	INTERGENIC
SBS	Chr5	14060439	C-T	Hetero	INTERGENIC
SBS	Chr6	3942283	G-A	Hetero	INTRON
SBS	Chr6	6330033	A-G	Hetero	INTERGENIC
SBS	Chr6	7550924	C-T	Hetero	INTERGENIC
SBS	Chr6	29368146	A-T	Homo	INTRON
SBS	Chr7	22596733	A-G	Hetero	INTERGENIC
SBS	Chr7	26715075	G-A	Homo	INTRON
SBS	Chr8	16369768	T-A	Hetero	INTERGENIC
SBS	Chr9	5310210	A-T	Hetero	INTERGENIC
SBS	Chr9	13765810	G-A	Homo	INTERGENIC
SBS	Chr9	16773955	T-C	Homo	INTERGENIC
SBS	Chr10	2182936	A-G	Hetero	INTERGENIC
SBS	Chr10	14033226	C-A	Hetero	INTRON
SBS	Chr10	14132796	T-C	Hetero	UTR_3_PRIME
SBS	Chr11	22505242	G-A	Homo	INTERGENIC
SBS	Chr11	27477188	C-T	Homo	INTERGENIC
SBS	Chr12	25542266	G-A	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	4419470	4419477	7
Deletion	Chr8	7906948	7906951	3
Deletion	Chr2	10036091	10036094	3
Deletion	Chr4	10248875	10248876	1
Deletion	Chr6	12530377	12530380	3
Deletion	Chr2	13094657	13094730	73
Deletion	Chr7	16687712	16687713	1
Deletion	Chr8	18606123	18606126	3
Deletion	Chr12	21883740	21883751	11
Deletion	Chr4	28497035	28497037	2
Deletion	Chr4	34516563	34516568	5

Variant Type	Chromosome	Position 1	Chromosome	Position 2	Number of Genes
Translocation	Chr10	3042784	Chr2	35416895
Translocation	Chr10	3047490	Chr2	35416908

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes