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Mutant Information

Mutant Name	FN3730-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3730-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 30

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 13339982 C-G Hetero INTERGENIC
SBS Chr1 24741339 T-C Hetero INTERGENIC
SBS Chr1 37196970 C-A Hetero INTERGENIC
SBS Chr2 23448016 G-T Homo INTRON
SBS Chr3 4446731 G-A Hetero INTERGENIC
SBS Chr3 14120651 G-T Hetero INTERGENIC
SBS Chr3 22219954 C-T Homo INTERGENIC
SBS Chr4 11920835 C-T Homo INTERGENIC
SBS Chr4 18230553 C-A Hetero INTERGENIC
SBS Chr4 19703449 T-C Hetero INTERGENIC
SBS Chr5 12141238 C-A Homo INTERGENIC
SBS Chr5 29675995 C-T Hetero INTERGENIC
SBS Chr6 10969561 C-T Hetero INTRON
SBS Chr6 22967868 T-C Hetero INTERGENIC
SBS Chr7 2690948 T-C Hetero INTERGENIC
SBS Chr7 19423738 A-T Hetero INTRON
SBS Chr7 22283724 C-T Homo INTERGENIC
SBS Chr8 9089054 G-A Homo INTERGENIC
SBS Chr8 13986616 A-T Homo INTERGENIC
SBS Chr8 17505267 G-A Homo INTERGENIC
SBS Chr8 19262160 T-G Homo INTERGENIC
SBS Chr9 16969992 T-A Hetero INTERGENIC
SBS Chr9 17483015 T-C Hetero START_GAINED
SBS Chr10 7618874 G-C Homo INTERGENIC
SBS Chr10 23653196 G-A Homo INTERGENIC
SBS Chr10 23653199 A-C Homo INTERGENIC
SBS Chr10 23653200 G-T Homo INTERGENIC
SBS Chr11 13239845 C-T Hetero INTERGENIC
SBS Chr12 2878028 T-A Hetero INTERGENIC
SBS Chr12 25205212 G-A Homo INTRON

Deletions: 23

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr8 1075572 1075594 22
Deletion Chr3 3851611 3851614 3
Deletion Chr1 3905919 3905926 7
Deletion Chr1 5884596 5884601 5
Deletion Chr1 6349015 6349023 8
Deletion Chr5 6750726 6750727 1
Deletion Chr2 7957183 7957193 10
Deletion Chr7 8437855 8437866 11
Deletion Chr5 11112001 11133000 20999
Deletion Chr4 11534238 11534243 5
Deletion Chr8 13428435 13428436 1
Deletion Chr7 13829863 13829864 1
Deletion Chr11 13988743 13988748 5
Deletion Chr1 14452570 14452589 19
Deletion Chr9 17492954 17492964 10
Deletion Chr8 17533494 17533524 30
Deletion Chr4 19150941 19150944 3
Deletion Chr9 19287089 19287093 4 OsKitaake09g156200
Deletion Chr2 20858322 20858323 1
Deletion Chr2 21077981 21077983 2
Deletion Chr5 21807001 22006000 198999 22
Deletion Chr12 22075215 22075219 4
Deletion Chr4 26438636 26438637 1

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr4 28541969 28541974 4
Insertion Chr5 22809292 22809297 4
Insertion Chr10 22635617 22635620 2
Insertion Chr11 18280188 18280190 1

Inversions: 2

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr3 29287342 29383044
Inversion Chr3 29287349 29383057

Translocations: 8

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr9 11254949 Chr4 31217448
Translocation Chr9 11255387 Chr4 31217458 OsKitaake09g070100
Translocation Chr8 15812708 Chr5 21769992 OsKitaake05g177500
Translocation Chr8 15817736 Chr5 21562023
Translocation Chr8 17330869 Chr5 22004178
Translocation Chr11 19405674 Chr3 28469666 OsKitaake03g295000
Translocation Chr11 19406256 Chr5 11131574
Translocation Chr5 22005661 Chr3 28469669 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	13339982	C-G	Hetero	INTERGENIC
SBS	Chr1	24741339	T-C	Hetero	INTERGENIC
SBS	Chr1	37196970	C-A	Hetero	INTERGENIC
SBS	Chr2	23448016	G-T	Homo	INTRON
SBS	Chr3	4446731	G-A	Hetero	INTERGENIC
SBS	Chr3	14120651	G-T	Hetero	INTERGENIC
SBS	Chr3	22219954	C-T	Homo	INTERGENIC
SBS	Chr4	11920835	C-T	Homo	INTERGENIC
SBS	Chr4	18230553	C-A	Hetero	INTERGENIC
SBS	Chr4	19703449	T-C	Hetero	INTERGENIC
SBS	Chr5	12141238	C-A	Homo	INTERGENIC
SBS	Chr5	29675995	C-T	Hetero	INTERGENIC
SBS	Chr6	10969561	C-T	Hetero	INTRON
SBS	Chr6	22967868	T-C	Hetero	INTERGENIC
SBS	Chr7	2690948	T-C	Hetero	INTERGENIC
SBS	Chr7	19423738	A-T	Hetero	INTRON
SBS	Chr7	22283724	C-T	Homo	INTERGENIC
SBS	Chr8	9089054	G-A	Homo	INTERGENIC
SBS	Chr8	13986616	A-T	Homo	INTERGENIC
SBS	Chr8	17505267	G-A	Homo	INTERGENIC
SBS	Chr8	19262160	T-G	Homo	INTERGENIC
SBS	Chr9	16969992	T-A	Hetero	INTERGENIC
SBS	Chr9	17483015	T-C	Hetero	START_GAINED
SBS	Chr10	7618874	G-C	Homo	INTERGENIC
SBS	Chr10	23653196	G-A	Homo	INTERGENIC
SBS	Chr10	23653199	A-C	Homo	INTERGENIC
SBS	Chr10	23653200	G-T	Homo	INTERGENIC
SBS	Chr11	13239845	C-T	Hetero	INTERGENIC
SBS	Chr12	2878028	T-A	Hetero	INTERGENIC
SBS	Chr12	25205212	G-A	Homo	INTRON

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr8	1075572	1075594	22
Deletion	Chr3	3851611	3851614	3
Deletion	Chr1	3905919	3905926	7
Deletion	Chr1	5884596	5884601	5
Deletion	Chr1	6349015	6349023	8
Deletion	Chr5	6750726	6750727	1
Deletion	Chr2	7957183	7957193	10
Deletion	Chr7	8437855	8437866	11
Deletion	Chr5	11112001	11133000	20999
Deletion	Chr4	11534238	11534243	5
Deletion	Chr8	13428435	13428436	1
Deletion	Chr7	13829863	13829864	1
Deletion	Chr11	13988743	13988748	5
Deletion	Chr1	14452570	14452589	19
Deletion	Chr9	17492954	17492964	10
Deletion	Chr8	17533494	17533524	30
Deletion	Chr4	19150941	19150944	3
Deletion	Chr9	19287089	19287093	4	OsKitaake09g156200
Deletion	Chr2	20858322	20858323	1
Deletion	Chr2	21077981	21077983	2
Deletion	Chr5	21807001	22006000	198999	22
Deletion	Chr12	22075215	22075219	4
Deletion	Chr4	26438636	26438637	1

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr3	29287342	29383044
Inversion	Chr3	29287349	29383057

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes