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Mutant Information

Mutant Name	FN3731-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3731-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 23

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 16246239 G-T Hetero INTERGENIC
SBS Chr1 16246240 C-T Hetero INTERGENIC
SBS Chr1 16583050 G-A Hetero INTERGENIC
SBS Chr1 41728547 T-A Homo INTERGENIC
SBS Chr2 2849537 T-A Hetero INTRON
SBS Chr2 22845320 G-T Homo INTERGENIC
SBS Chr2 29740155 A-G Hetero SPLICE_SITE_DONOR OsKitaake02g300800
SBS Chr3 1059286 T-A Hetero UTR_3_PRIME
SBS Chr3 9896361 A-T Hetero INTERGENIC
SBS Chr3 29178407 C-T Hetero INTERGENIC
SBS Chr4 6553187 A-C Homo INTERGENIC
SBS Chr4 11479140 C-T Homo INTERGENIC
SBS Chr4 17430939 T-A Homo INTERGENIC
SBS Chr6 5621430 C-T Hetero INTERGENIC
SBS Chr6 5621434 T-A Hetero INTERGENIC
SBS Chr6 11581331 G-C Hetero INTERGENIC
SBS Chr7 18128150 G-A Homo INTERGENIC
SBS Chr9 6102234 G-A Hetero INTERGENIC
SBS Chr9 12260101 G-A Hetero INTERGENIC
SBS Chr10 5813553 T-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g040100
SBS Chr10 8387433 T-C Hetero INTERGENIC
SBS Chr10 17630917 T-A Homo INTERGENIC
SBS Chr12 201444 C-A Homo UTR_5_PRIME

Deletions: 6

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 4879891 4879896 5
Deletion Chr7 7947169 7947170 1
Deletion Chr11 15415841 15415842 1
Deletion Chr9 18725010 18725016 6
Deletion Chr12 19730110 19730114 4
Deletion Chr4 22072539 22072541 2

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 6221071 6221074 2
Insertion Chr4 22072518 22072521 2
Insertion Chr5 2837653 2837656 2
Insertion Chr5 16581660 16581663 2

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr4 17000942 17710898 OsKitaake04g083200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	16246239	G-T	Hetero	INTERGENIC
SBS	Chr1	16246240	C-T	Hetero	INTERGENIC
SBS	Chr1	16583050	G-A	Hetero	INTERGENIC
SBS	Chr1	41728547	T-A	Homo	INTERGENIC
SBS	Chr2	2849537	T-A	Hetero	INTRON
SBS	Chr2	22845320	G-T	Homo	INTERGENIC
SBS	Chr2	29740155	A-G	Hetero	SPLICE_SITE_DONOR	OsKitaake02g300800
SBS	Chr3	1059286	T-A	Hetero	UTR_3_PRIME
SBS	Chr3	9896361	A-T	Hetero	INTERGENIC
SBS	Chr3	29178407	C-T	Hetero	INTERGENIC
SBS	Chr4	6553187	A-C	Homo	INTERGENIC
SBS	Chr4	11479140	C-T	Homo	INTERGENIC
SBS	Chr4	17430939	T-A	Homo	INTERGENIC
SBS	Chr6	5621430	C-T	Hetero	INTERGENIC
SBS	Chr6	5621434	T-A	Hetero	INTERGENIC
SBS	Chr6	11581331	G-C	Hetero	INTERGENIC
SBS	Chr7	18128150	G-A	Homo	INTERGENIC
SBS	Chr9	6102234	G-A	Hetero	INTERGENIC
SBS	Chr9	12260101	G-A	Hetero	INTERGENIC
SBS	Chr10	5813553	T-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g040100
SBS	Chr10	8387433	T-C	Hetero	INTERGENIC
SBS	Chr10	17630917	T-A	Homo	INTERGENIC
SBS	Chr12	201444	C-A	Homo	UTR_5_PRIME

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	4879891	4879896	5
Deletion	Chr7	7947169	7947170	1
Deletion	Chr11	15415841	15415842	1
Deletion	Chr9	18725010	18725016	6
Deletion	Chr12	19730110	19730114	4
Deletion	Chr4	22072539	22072541	2

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr4	17000942	17710898	OsKitaake04g083200

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes