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| Mutant Information |
|---|
| Mutant Name | FN3732-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3732-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 33
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 13819027 | T-C | Hetero | INTERGENIC | |
| SBS | Chr1 | 23981868 | G-A | Hetero | INTERGENIC | |
| SBS | Chr1 | 42994351 | A-T | Hetero | INTERGENIC | |
| SBS | Chr1 | 42994354 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 9034925 | T-C | Hetero | INTRON | |
| SBS | Chr3 | 14039075 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 14039081 | C-T | Hetero | INTERGENIC | |
| SBS | Chr3 | 28977954 | C-T | Hetero | UTR_3_PRIME | |
| SBS | Chr3 | 34216602 | C-G | Hetero | INTRON | |
| SBS | Chr3 | 35024386 | A-G | Hetero | INTERGENIC | |
| SBS | Chr3 | 36271437 | G-A | Hetero | INTERGENIC | |
| SBS | Chr3 | 37480925 | C-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 4358230 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 8903373 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 14165262 | G-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 14581283 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 25588494 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 27089044 | T-C | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr5 | 3882044 | T-C | Homo | INTERGENIC | |
| SBS | Chr5 | 21554756 | G-T | Homo | UTR_3_PRIME | |
| SBS | Chr5 | 22364041 | C-T | Homo | INTERGENIC | |
| SBS | Chr6 | 52472 | G-A | Hetero | INTERGENIC | |
| SBS | Chr7 | 416275 | T-C | Homo | INTRON | |
| SBS | Chr7 | 7668145 | T-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake07g084800 |
| SBS | Chr7 | 11379421 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 7904814 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 4172313 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 11862844 | G-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 12146156 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 8684694 | A-G | Homo | INTERGENIC | |
| SBS | Chr11 | 21963110 | T-A | Homo | INTERGENIC | |
| SBS | Chr11 | 21963119 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 18526570 | T-C | Homo | UTR_3_PRIME |
Deletions: 9
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 880410 | 880420 | 10 | |
| Deletion | Chr5 | 1993626 | 1993637 | 11 | |
| Deletion | Chr10 | 14853821 | 14853830 | 9 | |
| Deletion | Chr12 | 20996895 | 20996897 | 2 | |
| Deletion | Chr9 | 22546580 | 22546581 | 1 | |
| Deletion | Chr8 | 22644001 | 22727000 | 82999 | 7 |
| Deletion | Chr11 | 26191053 | 26191057 | 4 | |
| Deletion | Chr2 | 30137643 | 30137644 | 1 | OsKitaake02g306100 |
| Deletion | Chr1 | 35771839 | 35771847 | 8 |
Insertions: 2
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr5 | 11573950 | 11573953 | 2 | |
| Insertion | Chr10 | 16813093 | 16813096 | 2 |
Inversions: 2
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr8 | 10826817 | 10827260 | |
| Inversion | Chr8 | 10826819 | 10827262 |
Translocations: 2
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr2 | 15143115 | Chr1 | 29194442 | |
| Translocation | Chr2 | 15143119 | Chr1 | 29195306 |