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Mutant Information

Mutant Name	FN3733-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3733-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 25

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3006404 T-A Homo UTR_3_PRIME
SBS Chr1 5527332 A-C Homo INTRON
SBS Chr1 17354569 G-A Hetero INTERGENIC
SBS Chr1 20669792 C-T Hetero SYNONYMOUS_CODING
SBS Chr1 31075000 A-C Homo INTERGENIC
SBS Chr2 18706451 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake02g184000
SBS Chr3 6145149 C-T Homo SYNONYMOUS_CODING
SBS Chr3 11756436 T-G Homo UTR_3_PRIME
SBS Chr3 36582676 C-T Homo UTR_3_PRIME
SBS Chr5 6746197 G-A Hetero SYNONYMOUS_CODING
SBS Chr5 15979128 G-A Hetero INTERGENIC
SBS Chr5 21145666 T-G Hetero INTERGENIC
SBS Chr6 482286 C-T Homo INTERGENIC
SBS Chr6 16821752 C-T Hetero INTERGENIC
SBS Chr6 28031598 A-T Hetero INTERGENIC
SBS Chr6 28652929 G-A Hetero INTERGENIC
SBS Chr7 18508177 A-T Hetero INTRON
SBS Chr8 13101510 C-A Homo INTERGENIC
SBS Chr8 13724587 A-G Hetero INTERGENIC
SBS Chr8 16714356 C-T Hetero INTERGENIC
SBS Chr8 17777190 A-C Hetero INTERGENIC
SBS Chr9 11002199 T-C Hetero INTERGENIC
SBS Chr9 17695230 C-T Homo INTERGENIC
SBS Chr10 12956852 G-A Hetero INTERGENIC
SBS Chr12 20953991 G-A Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr3 2308172 2308188 16
Deletion Chr10 13394365 13394366 1
Deletion Chr10 14537504 14537505 1 OsKitaake10g091100
Deletion Chr7 15683010 15683013 3
Deletion Chr9 15849445 15849453 8
Deletion Chr2 16522053 16522059 6
Deletion Chr7 18871967 18871968 1
Deletion Chr11 21507926 21507932 6
Deletion Chr4 21858932 21858933 1
Deletion Chr6 22052144 22052146 2 OsKitaake06g194200
Deletion Chr4 22421880 22421885 5
Deletion Chr3 23706518 23706520 2
Deletion Chr5 25823547 25823548 1
Deletion Chr3 26772506 26772523 17
Deletion Chr1 31310508 31310514 6
Deletion Chr4 36539584 36539618 34

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 15041476 15041480 3
Insertion Chr1 20837435 20837438 2
Insertion Chr6 11975897 11975900 2
Insertion Chr7 10420327 10420330 2
Insertion Chr10 4492991 4492994 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr9 6337960 6408025
Inversion Chr9 6337961 6408024
Inversion Chr7 13108990 13266143 OsKitaake07g117000

Translocations: 9

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr8 11300003 Chr1 4477828 OsKitaake01g059500
Translocation Chr8 11300012 Chr7 13109000
Translocation Chr8 11300983 Chr7 15000451
Translocation Chr3 11360449 Chr2 30849641
Translocation Chr3 11360866 Chr2 30849650
Translocation Chr8 11437097 Chr6 27207437
Translocation Chr8 11618627 Chr6 27210827 OsKitaake08g102400
Translocation Chr4 36112791 Chr3 12025900 2
Translocation Chr4 36112809 Chr3 12019965 2

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3006404	T-A	Homo	UTR_3_PRIME
SBS	Chr1	5527332	A-C	Homo	INTRON
SBS	Chr1	17354569	G-A	Hetero	INTERGENIC
SBS	Chr1	20669792	C-T	Hetero	SYNONYMOUS_CODING
SBS	Chr1	31075000	A-C	Homo	INTERGENIC
SBS	Chr2	18706451	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake02g184000
SBS	Chr3	6145149	C-T	Homo	SYNONYMOUS_CODING
SBS	Chr3	11756436	T-G	Homo	UTR_3_PRIME
SBS	Chr3	36582676	C-T	Homo	UTR_3_PRIME
SBS	Chr5	6746197	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr5	15979128	G-A	Hetero	INTERGENIC
SBS	Chr5	21145666	T-G	Hetero	INTERGENIC
SBS	Chr6	482286	C-T	Homo	INTERGENIC
SBS	Chr6	16821752	C-T	Hetero	INTERGENIC
SBS	Chr6	28031598	A-T	Hetero	INTERGENIC
SBS	Chr6	28652929	G-A	Hetero	INTERGENIC
SBS	Chr7	18508177	A-T	Hetero	INTRON
SBS	Chr8	13101510	C-A	Homo	INTERGENIC
SBS	Chr8	13724587	A-G	Hetero	INTERGENIC
SBS	Chr8	16714356	C-T	Hetero	INTERGENIC
SBS	Chr8	17777190	A-C	Hetero	INTERGENIC
SBS	Chr9	11002199	T-C	Hetero	INTERGENIC
SBS	Chr9	17695230	C-T	Homo	INTERGENIC
SBS	Chr10	12956852	G-A	Hetero	INTERGENIC
SBS	Chr12	20953991	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr3	2308172	2308188	16
Deletion	Chr10	13394365	13394366	1
Deletion	Chr10	14537504	14537505	1	OsKitaake10g091100
Deletion	Chr7	15683010	15683013	3
Deletion	Chr9	15849445	15849453	8
Deletion	Chr2	16522053	16522059	6
Deletion	Chr7	18871967	18871968	1
Deletion	Chr11	21507926	21507932	6
Deletion	Chr4	21858932	21858933	1
Deletion	Chr6	22052144	22052146	2	OsKitaake06g194200
Deletion	Chr4	22421880	22421885	5
Deletion	Chr3	23706518	23706520	2
Deletion	Chr5	25823547	25823548	1
Deletion	Chr3	26772506	26772523	17
Deletion	Chr1	31310508	31310514	6
Deletion	Chr4	36539584	36539618	34

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr9	6337960	6408025
Inversion	Chr9	6337961	6408024
Inversion	Chr7	13108990	13266143	OsKitaake07g117000

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes