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| Mutant Information |
|---|
| Mutant Name | FN3738-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3738-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 23
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 15316607 | T-C | Hetero | INTRON | |
| SBS | Chr1 | 31038308 | G-C | Homo | INTERGENIC | |
| SBS | Chr2 | 6261131 | C-T | Homo | INTERGENIC | |
| SBS | Chr3 | 5446985 | T-C | Homo | INTERGENIC | |
| SBS | Chr3 | 11308485 | A-G | Homo | INTRON | |
| SBS | Chr3 | 20868265 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 25400273 | A-G | Hetero | INTERGENIC | |
| SBS | Chr4 | 25645199 | C-T | Hetero | INTERGENIC | |
| SBS | Chr5 | 18992799 | T-A | Homo | INTERGENIC | |
| SBS | Chr7 | 5782528 | G-T | Homo | INTERGENIC | |
| SBS | Chr7 | 18864556 | A-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 2392988 | A-C | Hetero | NON_SYNONYMOUS_CODING | OsKitaake08g028700 |
| SBS | Chr8 | 5941515 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 17845725 | T-A | Hetero | INTRON | |
| SBS | Chr8 | 17845726 | G-A | Hetero | INTRON | |
| SBS | Chr8 | 22215373 | C-T | Hetero | INTERGENIC | |
| SBS | Chr9 | 11815649 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 2652414 | C-A | Hetero | INTERGENIC | |
| SBS | Chr10 | 13031659 | C-T | Hetero | SYNONYMOUS_CODING | |
| SBS | Chr10 | 18448716 | A-G | Hetero | INTERGENIC | |
| SBS | Chr11 | 16230898 | G-C | Hetero | INTERGENIC | |
| SBS | Chr12 | 8300252 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 21966595 | G-A | Hetero | INTRON |
Deletions: 10
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr5 | 206800 | 206808 | 8 | OsKitaake05g002600 |
| Deletion | Chr3 | 767853 | 767855 | 2 | |
| Deletion | Chr12 | 959001 | 1114000 | 154999 | 27 |
| Deletion | Chr4 | 7276821 | 7276829 | 8 | |
| Deletion | Chr8 | 14892001 | 14983000 | 90999 | 6 |
| Deletion | Chr5 | 20054648 | 20054649 | 1 | |
| Deletion | Chr5 | 23192883 | 23192896 | 13 | |
| Deletion | Chr3 | 23270979 | 23270981 | 2 | |
| Deletion | Chr4 | 25191732 | 25191733 | 1 | |
| Deletion | Chr1 | 41312356 | 41312358 | 2 |
Insertions: 4
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr3 | 13058529 | 13058532 | 2 | |
| Insertion | Chr7 | 13011309 | 13011311 | 1 | |
| Insertion | Chr10 | 6934917 | 6934920 | 2 | |
| Insertion | Chr11 | 2511725 | 2511728 | 2 |
Inversions: 4
Variant Type |
Chromosome |
Position 1 |
Position 2 |
Number of Genes |
| Inversion | Chr3 | 3488295 | 3561801 | |
| Inversion | Chr3 | 3488309 | 3561814 | |
| Inversion | Chr2 | 33233626 | 34149126 | |
| Inversion | Chr2 | 33297034 | 34149137 | OsKitaake02g343000 |
Translocations: 7
Variant Type |
Chromosome |
Position 1 |
Chromosome |
Position 2 |
Number of Genes |
| Translocation | Chr12 | 964449 | Chr8 | 13385040 | OsKitaake08g110300 |
| Translocation | Chr12 | 1119933 | Chr8 | 13385361 | OsKitaake08g110300 |
| Translocation | Chr9 | 3949199 | Chr5 | 26448671 | |
| Translocation | Chr9 | 3949404 | Chr5 | 26448672 | |
| Translocation | Chr10 | 22189257 | Chr2 | 26571841 | OsKitaake10g181000 |
| Translocation | Chr10 | 22190540 | Chr2 | 26571834 | OsKitaake10g181000 |
| Translocation | Chr8 | 28600916 | Chr5 | 17438020 |