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Mutant Information

Mutant Name	FN3743-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3743-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 37

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 3484156 G-A Hetero INTERGENIC
SBS Chr1 5886995 G-C Hetero INTERGENIC
SBS Chr1 8530974 C-G Hetero START_GAINED
SBS Chr1 35997358 C-T Hetero INTERGENIC
SBS Chr1 43071133 C-T Homo INTERGENIC
SBS Chr2 508905 A-G Homo INTRON
SBS Chr2 34623962 G-C Homo INTERGENIC
SBS Chr3 4800317 A-G Hetero INTRON
SBS Chr3 30362350 T-A Hetero SPLICE_SITE_REGION
SBS Chr3 30362355 G-A Hetero SPLICE_SITE_ACCEPTOR OsKitaake03g318500
SBS Chr5 1327160 C-G Homo INTERGENIC
SBS Chr5 9420672 C-T Hetero INTERGENIC
SBS Chr5 22246669 A-C Homo INTERGENIC
SBS Chr6 1534825 C-T Hetero NON_SYNONYMOUS_CODING OsKitaake06g018000
SBS Chr6 1733077 T-A Hetero INTERGENIC
SBS Chr6 1733078 T-A Hetero INTERGENIC
SBS Chr6 2873712 C-T Homo INTERGENIC
SBS Chr7 3143991 C-T Hetero INTERGENIC
SBS Chr7 17640212 A-T Hetero INTRON
SBS Chr8 14942812 C-T Hetero INTERGENIC
SBS Chr9 15069539 T-C Homo INTERGENIC
SBS Chr10 8543801 C-T Hetero INTERGENIC
SBS Chr10 8638342 T-C Homo INTERGENIC
SBS Chr10 10121286 T-C Hetero INTERGENIC
SBS Chr10 18870699 C-T Homo INTERGENIC
SBS Chr10 23013220 G-C Hetero NON_SYNONYMOUS_CODING OsKitaake10g192900
SBS Chr11 7648718 C-T Hetero INTERGENIC
SBS Chr11 9012184 G-A Hetero INTERGENIC
SBS Chr11 11465430 G-T Homo INTERGENIC
SBS Chr11 21290517 G-T Homo INTERGENIC
SBS Chr12 1803134 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake12g026900
SBS Chr12 6024334 G-A Hetero INTERGENIC
SBS Chr12 7908791 T-C Hetero INTERGENIC
SBS Chr12 10888479 G-A Hetero INTERGENIC
SBS Chr12 21460455 G-A Homo INTERGENIC
SBS Chr12 21460456 A-T Homo INTERGENIC
SBS Chr12 23323494 G-A Hetero INTERGENIC

Deletions: 12

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr9 1461966 1461976 10
Deletion Chr6 4737832 4737836 4
Deletion Chr12 5579001 5616000 36999 2
Deletion Chr3 7523939 7523940 1 OsKitaake03g104600
Deletion Chr3 8385568 8385569 1
Deletion Chr11 9839785 9839788 3
Deletion Chr8 14373301 14373311 10
Deletion Chr4 14584636 14584661 25
Deletion Chr12 18759109 18759116 7
Deletion Chr11 22907261 22907271 10
Deletion Chr12 23473143 23473145 2
Deletion Chr2 30256001 30296000 39999 5

Insertions: 4

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr3 22268486 22268494 7
Insertion Chr3 32383879 32383882 2
Insertion Chr11 9232325 9232328 2
Insertion Chr5 30240668 30240670 1

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr12 7585437 7972606

Translocations: 6

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr12 7959768 Chr10 19833989
Translocation Chr12 7962632 Chr10 19833985
Translocation Chr12 24866908 Chr8 28692620 OsKitaake08g246100
Translocation Chr12 24867400 Chr8 28692648 OsKitaake08g246100
Translocation Chr12 24867417 Chr1 10444398 OsKitaake01g130700
Translocation Chr12 24873710 Chr1 10444390 OsKitaake01g130700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	3484156	G-A	Hetero	INTERGENIC
SBS	Chr1	5886995	G-C	Hetero	INTERGENIC
SBS	Chr1	8530974	C-G	Hetero	START_GAINED
SBS	Chr1	35997358	C-T	Hetero	INTERGENIC
SBS	Chr1	43071133	C-T	Homo	INTERGENIC
SBS	Chr2	508905	A-G	Homo	INTRON
SBS	Chr2	34623962	G-C	Homo	INTERGENIC
SBS	Chr3	4800317	A-G	Hetero	INTRON
SBS	Chr3	30362350	T-A	Hetero	SPLICE_SITE_REGION
SBS	Chr3	30362355	G-A	Hetero	SPLICE_SITE_ACCEPTOR	OsKitaake03g318500
SBS	Chr5	1327160	C-G	Homo	INTERGENIC
SBS	Chr5	9420672	C-T	Hetero	INTERGENIC
SBS	Chr5	22246669	A-C	Homo	INTERGENIC
SBS	Chr6	1534825	C-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake06g018000
SBS	Chr6	1733077	T-A	Hetero	INTERGENIC
SBS	Chr6	1733078	T-A	Hetero	INTERGENIC
SBS	Chr6	2873712	C-T	Homo	INTERGENIC
SBS	Chr7	3143991	C-T	Hetero	INTERGENIC
SBS	Chr7	17640212	A-T	Hetero	INTRON
SBS	Chr8	14942812	C-T	Hetero	INTERGENIC
SBS	Chr9	15069539	T-C	Homo	INTERGENIC
SBS	Chr10	8543801	C-T	Hetero	INTERGENIC
SBS	Chr10	8638342	T-C	Homo	INTERGENIC
SBS	Chr10	10121286	T-C	Hetero	INTERGENIC
SBS	Chr10	18870699	C-T	Homo	INTERGENIC
SBS	Chr10	23013220	G-C	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g192900
SBS	Chr11	7648718	C-T	Hetero	INTERGENIC
SBS	Chr11	9012184	G-A	Hetero	INTERGENIC
SBS	Chr11	11465430	G-T	Homo	INTERGENIC
SBS	Chr11	21290517	G-T	Homo	INTERGENIC
SBS	Chr12	1803134	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake12g026900
SBS	Chr12	6024334	G-A	Hetero	INTERGENIC
SBS	Chr12	7908791	T-C	Hetero	INTERGENIC
SBS	Chr12	10888479	G-A	Hetero	INTERGENIC
SBS	Chr12	21460455	G-A	Homo	INTERGENIC
SBS	Chr12	21460456	A-T	Homo	INTERGENIC
SBS	Chr12	23323494	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr9	1461966	1461976	10
Deletion	Chr6	4737832	4737836	4
Deletion	Chr12	5579001	5616000	36999	2
Deletion	Chr3	7523939	7523940	1	OsKitaake03g104600
Deletion	Chr3	8385568	8385569	1
Deletion	Chr11	9839785	9839788	3
Deletion	Chr8	14373301	14373311	10
Deletion	Chr4	14584636	14584661	25
Deletion	Chr12	18759109	18759116	7
Deletion	Chr11	22907261	22907271	10
Deletion	Chr12	23473143	23473145	2
Deletion	Chr2	30256001	30296000	39999	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr12	7585437	7972606

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes