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Mutant Information

Mutant Name	FN3746-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3746-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 34

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 1941084 G-A Hetero INTERGENIC
SBS Chr1 4392486 G-A Hetero START_GAINED
SBS Chr1 36626414 G-A Hetero INTERGENIC
SBS Chr2 6658538 T-C Hetero INTERGENIC
SBS Chr2 6658543 T-A Hetero INTERGENIC
SBS Chr2 36518821 T-G Hetero INTRON
SBS Chr3 3450233 C-A Hetero INTERGENIC
SBS Chr3 9073035 G-A Hetero SYNONYMOUS_CODING
SBS Chr3 9073038 T-A Hetero SYNONYMOUS_CODING
SBS Chr3 9073039 C-A Hetero NON_SYNONYMOUS_CODING OsKitaake03g124500
SBS Chr3 13953240 A-G Homo INTRON
SBS Chr3 14822298 G-A Homo UTR_3_PRIME
SBS Chr3 34039877 A-C Homo NON_SYNONYMOUS_CODING OsKitaake03g368000
SBS Chr4 3415894 T-G Homo INTERGENIC
SBS Chr4 3415920 C-A Homo INTERGENIC
SBS Chr4 10002650 A-C Homo INTERGENIC
SBS Chr4 15479224 A-C Homo INTERGENIC
SBS Chr4 16748670 C-T Homo INTRON
SBS Chr4 18729764 T-C Homo INTRON
SBS Chr4 32846871 T-G Hetero NON_SYNONYMOUS_CODING OsKitaake04g265400
SBS Chr5 28563321 A-G Homo INTERGENIC
SBS Chr6 5842397 T-A Hetero INTERGENIC
SBS Chr6 12265666 A-T Hetero INTERGENIC
SBS Chr8 5220973 A-G Hetero INTERGENIC
SBS Chr8 7020907 G-T Homo INTERGENIC
SBS Chr8 13087146 C-G Hetero INTERGENIC
SBS Chr8 23822038 G-A Homo INTRON
SBS Chr8 25217586 T-A Hetero INTRON
SBS Chr9 16773955 T-C Hetero INTERGENIC
SBS Chr11 13236496 G-A Hetero INTERGENIC
SBS Chr11 29522464 C-T Hetero INTRON
SBS Chr12 8935162 T-C Hetero INTERGENIC
SBS Chr12 10339042 C-T Hetero INTERGENIC
SBS Chr12 10339043 C-T Hetero INTERGENIC

Deletions: 16

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr10 1362737 1362738 1
Deletion Chr10 5829249 5829251 2
Deletion Chr8 7975174 7975176 2
Deletion Chr3 8736001 8789000 52999 7
Deletion Chr7 10993284 10993285 1
Deletion Chr1 12200437 12200443 6
Deletion Chr10 13751630 13751632 2
Deletion Chr4 13971001 14102000 130999 5
Deletion Chr5 15035241 15035242 1
Deletion Chr2 19300857 19300861 4
Deletion Chr9 20388479 20388481 2
Deletion Chr11 22837188 22837204 16
Deletion Chr5 22914902 22914918 16
Deletion Chr8 25283513 25283516 3
Deletion Chr3 34293728 34293745 17
Deletion Chr1 40035129 40035134 5

Insertions: 2

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 20847101 20847104 2
Insertion Chr8 3526599 3526602 2

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr11 4318018 4318561
Inversion Chr2 4657865 4768509 OsKitaake02g066000
Inversion Chr1 24213221 24359514

Translocations: 10

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr10 2859435 Chr3 5068725 2
Translocation Chr10 2859439 Chr3 5070146 OsKitaake10g023500
Translocation Chr11 4318557 Chr1 9958247 OsKitaake01g126200
Translocation Chr11 4318989 Chr1 9958249 2
Translocation Chr2 4657891 Chr1 24213246
Translocation Chr2 4768521 Chr1 24215691 OsKitaake02g066000
Translocation Chr8 5620518 Chr3 23415331 OsKitaake08g061300
Translocation Chr8 5630239 Chr3 23415328
Translocation Chr9 16642529 Chr1 24219356 OsKitaake01g233200
Translocation Chr9 16644382 Chr1 24359653 OsKitaake09g122200

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	1941084	G-A	Hetero	INTERGENIC
SBS	Chr1	4392486	G-A	Hetero	START_GAINED
SBS	Chr1	36626414	G-A	Hetero	INTERGENIC
SBS	Chr2	6658538	T-C	Hetero	INTERGENIC
SBS	Chr2	6658543	T-A	Hetero	INTERGENIC
SBS	Chr2	36518821	T-G	Hetero	INTRON
SBS	Chr3	3450233	C-A	Hetero	INTERGENIC
SBS	Chr3	9073035	G-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	9073038	T-A	Hetero	SYNONYMOUS_CODING
SBS	Chr3	9073039	C-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake03g124500
SBS	Chr3	13953240	A-G	Homo	INTRON
SBS	Chr3	14822298	G-A	Homo	UTR_3_PRIME
SBS	Chr3	34039877	A-C	Homo	NON_SYNONYMOUS_CODING	OsKitaake03g368000
SBS	Chr4	3415894	T-G	Homo	INTERGENIC
SBS	Chr4	3415920	C-A	Homo	INTERGENIC
SBS	Chr4	10002650	A-C	Homo	INTERGENIC
SBS	Chr4	15479224	A-C	Homo	INTERGENIC
SBS	Chr4	16748670	C-T	Homo	INTRON
SBS	Chr4	18729764	T-C	Homo	INTRON
SBS	Chr4	32846871	T-G	Hetero	NON_SYNONYMOUS_CODING	OsKitaake04g265400
SBS	Chr5	28563321	A-G	Homo	INTERGENIC
SBS	Chr6	5842397	T-A	Hetero	INTERGENIC
SBS	Chr6	12265666	A-T	Hetero	INTERGENIC
SBS	Chr8	5220973	A-G	Hetero	INTERGENIC
SBS	Chr8	7020907	G-T	Homo	INTERGENIC
SBS	Chr8	13087146	C-G	Hetero	INTERGENIC
SBS	Chr8	23822038	G-A	Homo	INTRON
SBS	Chr8	25217586	T-A	Hetero	INTRON
SBS	Chr9	16773955	T-C	Hetero	INTERGENIC
SBS	Chr11	13236496	G-A	Hetero	INTERGENIC
SBS	Chr11	29522464	C-T	Hetero	INTRON
SBS	Chr12	8935162	T-C	Hetero	INTERGENIC
SBS	Chr12	10339042	C-T	Hetero	INTERGENIC
SBS	Chr12	10339043	C-T	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr10	1362737	1362738	1
Deletion	Chr10	5829249	5829251	2
Deletion	Chr8	7975174	7975176	2
Deletion	Chr3	8736001	8789000	52999	7
Deletion	Chr7	10993284	10993285	1
Deletion	Chr1	12200437	12200443	6
Deletion	Chr10	13751630	13751632	2
Deletion	Chr4	13971001	14102000	130999	5
Deletion	Chr5	15035241	15035242	1
Deletion	Chr2	19300857	19300861	4
Deletion	Chr9	20388479	20388481	2
Deletion	Chr11	22837188	22837204	16
Deletion	Chr5	22914902	22914918	16
Deletion	Chr8	25283513	25283516	3
Deletion	Chr3	34293728	34293745	17
Deletion	Chr1	40035129	40035134	5

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr11	4318018	4318561
Inversion	Chr2	4657865	4768509	OsKitaake02g066000
Inversion	Chr1	24213221	24359514

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes