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Mutant Information

Mutant Name	FN3748-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3748-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 26

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 32434532 G-T Homo INTRON
SBS Chr1 32434533 C-T Homo INTRON
SBS Chr1 43313290 C-A Homo INTERGENIC
SBS Chr2 1824869 T-C Hetero INTERGENIC
SBS Chr2 32085660 A-T Homo INTERGENIC
SBS Chr3 19952116 C-T Homo INTERGENIC
SBS Chr4 3090628 G-C Homo INTERGENIC
SBS Chr4 8055508 G-A Homo INTERGENIC
SBS Chr4 29353587 C-T Hetero INTERGENIC
SBS Chr4 33598623 T-C Homo INTRON
SBS Chr5 8779612 C-T Hetero INTERGENIC
SBS Chr5 22590329 A-T Hetero INTRON
SBS Chr6 10248388 G-T Hetero INTERGENIC
SBS Chr7 8854832 C-A Homo NON_SYNONYMOUS_CODING OsKitaake07g093600
SBS Chr7 26700391 C-T Hetero INTERGENIC
SBS Chr8 23075117 C-A Hetero INTRON
SBS Chr9 19063078 G-A Homo INTERGENIC
SBS Chr9 22316910 A-T Homo INTERGENIC
SBS Chr10 176982 T-C Hetero INTERGENIC
SBS Chr10 1933852 G-A Hetero NON_SYNONYMOUS_CODING OsKitaake10g015200
SBS Chr10 5187395 T-G Hetero INTERGENIC
SBS Chr10 14574056 A-T Hetero NON_SYNONYMOUS_CODING OsKitaake10g091500
SBS Chr11 2015797 T-C Hetero UTR_5_PRIME
SBS Chr11 29341596 T-C Hetero INTERGENIC
SBS Chr12 22076022 G-A Hetero INTERGENIC
SBS Chr12 25971866 G-A Hetero INTERGENIC

Deletions: 9

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr4 714649 714655 6
Deletion Chr3 3301892 3301893 1
Deletion Chr10 11099391 11099397 6
Deletion Chr10 12934529 12934532 3
Deletion Chr8 16274327 16274329 2
Deletion Chr1 22149659 22149660 1
Deletion Chr1 23803407 23803408 1
Deletion Chr7 26330461 26330463 2
Deletion Chr12 27023519 27023840 321

Inversions: 1

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr6 13665804 13891248 OsKitaake06g144700

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	32434532	G-T	Homo	INTRON
SBS	Chr1	32434533	C-T	Homo	INTRON
SBS	Chr1	43313290	C-A	Homo	INTERGENIC
SBS	Chr2	1824869	T-C	Hetero	INTERGENIC
SBS	Chr2	32085660	A-T	Homo	INTERGENIC
SBS	Chr3	19952116	C-T	Homo	INTERGENIC
SBS	Chr4	3090628	G-C	Homo	INTERGENIC
SBS	Chr4	8055508	G-A	Homo	INTERGENIC
SBS	Chr4	29353587	C-T	Hetero	INTERGENIC
SBS	Chr4	33598623	T-C	Homo	INTRON
SBS	Chr5	8779612	C-T	Hetero	INTERGENIC
SBS	Chr5	22590329	A-T	Hetero	INTRON
SBS	Chr6	10248388	G-T	Hetero	INTERGENIC
SBS	Chr7	8854832	C-A	Homo	NON_SYNONYMOUS_CODING	OsKitaake07g093600
SBS	Chr7	26700391	C-T	Hetero	INTERGENIC
SBS	Chr8	23075117	C-A	Hetero	INTRON
SBS	Chr9	19063078	G-A	Homo	INTERGENIC
SBS	Chr9	22316910	A-T	Homo	INTERGENIC
SBS	Chr10	176982	T-C	Hetero	INTERGENIC
SBS	Chr10	1933852	G-A	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g015200
SBS	Chr10	5187395	T-G	Hetero	INTERGENIC
SBS	Chr10	14574056	A-T	Hetero	NON_SYNONYMOUS_CODING	OsKitaake10g091500
SBS	Chr11	2015797	T-C	Hetero	UTR_5_PRIME
SBS	Chr11	29341596	T-C	Hetero	INTERGENIC
SBS	Chr12	22076022	G-A	Hetero	INTERGENIC
SBS	Chr12	25971866	G-A	Hetero	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr4	714649	714655	6
Deletion	Chr3	3301892	3301893	1
Deletion	Chr10	11099391	11099397	6
Deletion	Chr10	12934529	12934532	3
Deletion	Chr8	16274327	16274329	2
Deletion	Chr1	22149659	22149660	1
Deletion	Chr1	23803407	23803408	1
Deletion	Chr7	26330461	26330463	2
Deletion	Chr12	27023519	27023840	321

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr6	13665804	13891248	OsKitaake06g144700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes