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| Mutant Information |
|---|
| Mutant Name | FN3749-S [Download] |
| Generation | M2 |
| Genus Species | Oryza Sativa |
| Cultivar | Kitaake |
| Alignment File (BAM File) | Download FN3749-S Alignment File |
| Seed Availability | Yes [Order Seeds] |
| Variant Information |
|---|
Single base substitutions: 21
Variant Type |
Chromosome |
Position |
Change |
Genotype |
Effect |
Gene Affected |
| SBS | Chr1 | 27140369 | G-T | Homo | INTERGENIC | |
| SBS | Chr1 | 28688708 | C-T | Homo | UTR_3_PRIME | |
| SBS | Chr4 | 20319334 | G-A | Hetero | NON_SYNONYMOUS_CODING | OsKitaake04g108400 |
| SBS | Chr4 | 30782202 | A-T | Hetero | INTERGENIC | |
| SBS | Chr4 | 32072065 | G-A | Hetero | INTERGENIC | |
| SBS | Chr4 | 34684368 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 23975457 | G-A | Hetero | INTERGENIC | |
| SBS | Chr6 | 30730734 | C-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 6472713 | T-G | Homo | INTERGENIC | |
| SBS | Chr8 | 13791533 | T-A | Hetero | INTERGENIC | |
| SBS | Chr8 | 13860949 | G-A | Homo | INTERGENIC | |
| SBS | Chr8 | 25871162 | C-T | Hetero | INTERGENIC | |
| SBS | Chr8 | 28627825 | C-T | Homo | INTERGENIC | |
| SBS | Chr9 | 1986570 | G-A | Hetero | INTERGENIC | |
| SBS | Chr9 | 9152594 | T-G | Hetero | INTERGENIC | |
| SBS | Chr10 | 8145091 | C-T | Hetero | INTERGENIC | |
| SBS | Chr10 | 9153266 | C-A | Hetero | INTERGENIC | |
| SBS | Chr11 | 2986428 | C-T | Homo | INTERGENIC | |
| SBS | Chr11 | 27396949 | C-A | Homo | INTERGENIC | |
| SBS | Chr11 | 27396970 | G-A | Homo | INTERGENIC | |
| SBS | Chr12 | 17649923 | C-T | Hetero | INTRON |
Deletions: 8
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Deletion | Chr8 | 575937 | 575950 | 13 | OsKitaake08g008400 |
| Deletion | Chr4 | 6520397 | 6520401 | 4 | |
| Deletion | Chr8 | 7091454 | 7091464 | 10 | |
| Deletion | Chr5 | 9383001 | 9434000 | 50999 | OsKitaake05g087100 |
| Deletion | Chr6 | 17978012 | 17978014 | 2 | |
| Deletion | Chr10 | 18200783 | 18200786 | 3 | |
| Deletion | Chr11 | 22304469 | 22304470 | 1 | |
| Deletion | Chr3 | 36654474 | 36654477 | 3 | OsKitaake03g408000 |
Insertions: 5
Variant Type |
Chromosome |
Start |
End |
Size(bp) |
Number of Genes |
| Insertion | Chr1 | 6483230 | 6483233 | 2 | |
| Insertion | Chr5 | 176980 | 176988 | 7 | |
| Insertion | Chr7 | 22028950 | 22028955 | 4 | |
| Insertion | Chr11 | 28055924 | 28055928 | 3 | OsKitaake11g230300  |
| Insertion | Chr8 | 13474384 | 13474391 | 6 |