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Mutant Information

Mutant Name	FN3750-S [Download]
Generation	M2
Genus Species	Oryza Sativa
Cultivar	Kitaake
Alignment File (BAM File)	Download FN3750-S Alignment File
Seed Availability	Yes [Order Seeds]

Variant Information

Single base substitutions: 32

Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

SBS Chr1 15350924 T-G Homo INTERGENIC
SBS Chr1 23891270 G-A Homo INTERGENIC
SBS Chr1 39802645 C-T Hetero INTERGENIC
SBS Chr2 8121808 A-T Hetero INTERGENIC
SBS Chr2 10596151 G-A Hetero INTERGENIC
SBS Chr2 11462517 C-T Hetero INTERGENIC
SBS Chr2 11651889 C-A Hetero INTERGENIC
SBS Chr2 12310968 C-T Hetero INTERGENIC
SBS Chr3 12858974 C-T Hetero INTERGENIC
SBS Chr3 23942704 C-T Homo INTERGENIC
SBS Chr3 25372659 G-A Homo INTERGENIC
SBS Chr3 26569121 G-T Homo INTERGENIC
SBS Chr3 33131481 G-A Hetero INTERGENIC
SBS Chr4 17172413 T-C Homo INTERGENIC
SBS Chr4 29674300 C-G Hetero INTERGENIC
SBS Chr5 604070 G-A Homo INTERGENIC
SBS Chr5 18489435 A-T Homo INTERGENIC
SBS Chr6 28781106 A-G Hetero INTERGENIC
SBS Chr6 29830318 A-G Hetero INTRON
SBS Chr7 8385542 A-G Hetero INTERGENIC
SBS Chr7 10755211 G-A Homo INTERGENIC
SBS Chr7 17185456 G-A Homo INTERGENIC
SBS Chr7 26189334 A-T Homo INTERGENIC
SBS Chr8 9023869 C-T Hetero INTERGENIC
SBS Chr8 9961474 C-A Hetero INTERGENIC
SBS Chr8 21028585 A-T Hetero INTERGENIC
SBS Chr9 22313999 C-T Hetero INTERGENIC
SBS Chr10 15967833 C-T Hetero UTR_5_PRIME
SBS Chr10 19351756 A-T Homo INTERGENIC
SBS Chr10 19351757 A-T Homo INTERGENIC
SBS Chr11 18044075 C-T Homo INTERGENIC
SBS Chr12 9324455 G-T Homo INTERGENIC

Deletions: 19

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Deletion Chr7 870034 870061 27
Deletion Chr3 1726571 1726573 2
Deletion Chr7 2165081 2165091 10
Deletion Chr12 9991281 9991286 5
Deletion Chr7 10794280 10794302 22
Deletion Chr11 11954890 11954892 2
Deletion Chr5 14820896 14820903 7
Deletion Chr1 18477111 18477122 11
Deletion Chr5 18755197 18755222 25
Deletion Chr7 19970344 19970345 1
Deletion Chr5 24123272 24123284 12
Deletion Chr7 25495033 25495059 26
Deletion Chr4 25842022 25842024 2
Deletion Chr7 26153608 26153616 8
Deletion Chr2 28150241 28150251 10
Deletion Chr2 30204749 30204751 2
Deletion Chr4 31927966 31927971 5 OsKitaake04g253400
Deletion Chr4 34121001 34139000 17999 OsKitaake04g284927
Deletion Chr1 39076391 39076397 6

Insertions: 5

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Insertion Chr1 10307011 10307014 2
Insertion Chr3 33634317 33634322 4
Insertion Chr6 10473928 10473933 4
Insertion Chr10 354263 354266 2
Insertion Chr5 9695636 9695638 1 OsKitaake05g088800

Inversions: 3

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Inversion Chr8 9622899 9719990
Inversion Chr8 9622901 9719997
Inversion Chr4 22292196 22570281 OsKitaake04g133700

Translocations: 5

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes

Translocation Chr6 9940141 Chr3 19783429
Translocation Chr6 9940340 Chr3 19783426
Translocation Chr12 19207846 Chr6 35223 OsKitaake12g143000
Translocation Chr4 34120125 Chr2 25969413
Translocation Chr4 34135908 Chr2 25969406 OsKitaake04g284927

Variant Type	Chromosome	Position	Change	Genotype	Effect	Gene Affected
SBS	Chr1	15350924	T-G	Homo	INTERGENIC
SBS	Chr1	23891270	G-A	Homo	INTERGENIC
SBS	Chr1	39802645	C-T	Hetero	INTERGENIC
SBS	Chr2	8121808	A-T	Hetero	INTERGENIC
SBS	Chr2	10596151	G-A	Hetero	INTERGENIC
SBS	Chr2	11462517	C-T	Hetero	INTERGENIC
SBS	Chr2	11651889	C-A	Hetero	INTERGENIC
SBS	Chr2	12310968	C-T	Hetero	INTERGENIC
SBS	Chr3	12858974	C-T	Hetero	INTERGENIC
SBS	Chr3	23942704	C-T	Homo	INTERGENIC
SBS	Chr3	25372659	G-A	Homo	INTERGENIC
SBS	Chr3	26569121	G-T	Homo	INTERGENIC
SBS	Chr3	33131481	G-A	Hetero	INTERGENIC
SBS	Chr4	17172413	T-C	Homo	INTERGENIC
SBS	Chr4	29674300	C-G	Hetero	INTERGENIC
SBS	Chr5	604070	G-A	Homo	INTERGENIC
SBS	Chr5	18489435	A-T	Homo	INTERGENIC
SBS	Chr6	28781106	A-G	Hetero	INTERGENIC
SBS	Chr6	29830318	A-G	Hetero	INTRON
SBS	Chr7	8385542	A-G	Hetero	INTERGENIC
SBS	Chr7	10755211	G-A	Homo	INTERGENIC
SBS	Chr7	17185456	G-A	Homo	INTERGENIC
SBS	Chr7	26189334	A-T	Homo	INTERGENIC
SBS	Chr8	9023869	C-T	Hetero	INTERGENIC
SBS	Chr8	9961474	C-A	Hetero	INTERGENIC
SBS	Chr8	21028585	A-T	Hetero	INTERGENIC
SBS	Chr9	22313999	C-T	Hetero	INTERGENIC
SBS	Chr10	15967833	C-T	Hetero	UTR_5_PRIME
SBS	Chr10	19351756	A-T	Homo	INTERGENIC
SBS	Chr10	19351757	A-T	Homo	INTERGENIC
SBS	Chr11	18044075	C-T	Homo	INTERGENIC
SBS	Chr12	9324455	G-T	Homo	INTERGENIC

Variant Type	Chromosome	Start	End	Size(bp)	Number of Genes
Deletion	Chr7	870034	870061	27
Deletion	Chr3	1726571	1726573	2
Deletion	Chr7	2165081	2165091	10
Deletion	Chr12	9991281	9991286	5
Deletion	Chr7	10794280	10794302	22
Deletion	Chr11	11954890	11954892	2
Deletion	Chr5	14820896	14820903	7
Deletion	Chr1	18477111	18477122	11
Deletion	Chr5	18755197	18755222	25
Deletion	Chr7	19970344	19970345	1
Deletion	Chr5	24123272	24123284	12
Deletion	Chr7	25495033	25495059	26
Deletion	Chr4	25842022	25842024	2
Deletion	Chr7	26153608	26153616	8
Deletion	Chr2	28150241	28150251	10
Deletion	Chr2	30204749	30204751	2
Deletion	Chr4	31927966	31927971	5	OsKitaake04g253400
Deletion	Chr4	34121001	34139000	17999	OsKitaake04g284927
Deletion	Chr1	39076391	39076397	6

Variant Type	Chromosome	Position 1	Position 2	Number of Genes
Inversion	Chr8	9622899	9719990
Inversion	Chr8	9622901	9719997
Inversion	Chr4	22292196	22570281	OsKitaake04g133700

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Variant Type

Chromosome

Position

Change

Genotype

Effect

Gene Affected

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Start

End

Size(bp)

Number of Genes

Variant Type

Chromosome

Position 1

Position 2

Number of Genes

Variant Type

Chromosome

Position 1

Chromosome

Position 2

Number of Genes